Miyakogusa Predicted Gene

Lj0g3v0091139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091139.1 Non Characterized Hit- tr|I3S326|I3S326_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.96,0,seg,NULL;
RIBOSOMAL_L27,Ribosomal protein L27, conserved site; Ribosomal L27
protein,Ribosomal prote,CUFF.4962.1
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g020680.1 | 50S ribosomal protein L27 | HC | chr3:6000247-...   218   2e-57
Medtr3g014010.1 | 50S ribosomal protein L27 | HC | chr3:3871485-...    98   5e-21

>Medtr3g020680.1 | 50S ribosomal protein L27 | HC |
           chr3:6000247-5996353 | 20130731
          Length = 193

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 130/192 (67%), Gaps = 4/192 (2%)

Query: 5   SLCMSFNIATAFKXXXXXXXXXXXXXXXX---XXXRPTSLVWAPQTRT-TPLTIQNAHKK 60
           ++CM FNIATAFK                      R T  V  P+    + L I+NAHKK
Sbjct: 2   AVCMGFNIATAFKSLSLSSPSSSSSSSFLSGSTTLRMTPSVSLPRIHHRSALIIRNAHKK 61

Query: 61  GAGSTKNGRDSESKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDYTIFSLIDG 120
           GAGSTKNGRDS  KRLGVK+YGDQVAKPGSIIVRQRGTKFHAGKNVG+GKD+TIFSLIDG
Sbjct: 62  GAGSTKNGRDSAGKRLGVKVYGDQVAKPGSIIVRQRGTKFHAGKNVGIGKDHTIFSLIDG 121

Query: 121 VVKFEKYGPDRKKISVYPREIPVENPNSYRARKREYFXXXXXXXXXXXXXXILRSQLVLA 180
           VVKFEKYGPD+KKISVYP+E  V NP+SYR RK +YF                + QL+LA
Sbjct: 122 VVKFEKYGPDKKKISVYPQEERVPNPDSYRLRKIKYFKMRRERKKAAKERRAFQPQLMLA 181

Query: 181 STDDAAITNPMC 192
           S DD AI NP C
Sbjct: 182 SVDDTAIENPDC 193


>Medtr3g014010.1 | 50S ribosomal protein L27 | HC |
           chr3:3871485-3868099 | 20130731
          Length = 148

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 57  AHKKGAGSTKNGRDSESKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDYTIFS 116
           A KK AGSTKNGRDS+ K LGVK +G +   PG+IIVRQRGT+FH G  VGLGKD+T+F+
Sbjct: 42  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFA 101

Query: 117 LIDGVVKFEKYG-PDRKKISVYPREIPVENP 146
           L +G VKFE+     RK + V P+E  V +P
Sbjct: 102 LKEGWVKFERNKLTGRKWVHVEPKEGHVLHP 132