Miyakogusa Predicted Gene

Lj0g3v0091079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091079.1 tr|B9I3U2|B9I3U2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_570288 PE=4
SV=1,61.82,0.000000000003,F-box,F-box domain, cyclin-like; A Receptor
for Ubiquitination Targets,F-box domain, cyclin-like; se,CUFF.4947.1
         (219 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099090.2 | F-box/LRR plant protein | HC | chr3:45413956-4...   319   1e-87
Medtr3g099090.1 | F-box/LRR plant protein | HC | chr3:45413956-4...   318   2e-87

>Medtr3g099090.2 | F-box/LRR plant protein | HC |
           chr3:45413956-45419675 | 20130731
          Length = 394

 Score =  319 bits (817), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 151/194 (77%), Positives = 175/194 (90%)

Query: 26  DSIMGVGLLNDDLLQNILTRLPALSFASAACVSKTWNSVSNRILSRPKLSSALSLNPSLT 85
           D I G+ +L+DDLL NI TRLPA+SFASA CV+K+WNSV NRI+SRPKL+SALSLNPSL 
Sbjct: 21  DPITGINVLSDDLLLNIFTRLPAISFASATCVNKSWNSVCNRIISRPKLASALSLNPSLR 80

Query: 86  DAVNEVLHKVLAEPIRPYFAIVNVGSGFESSKILRLVRKRLGFNIPVIVSVTNGIMGRDA 145
           DAVNEV+ KVL+EPIRPYFAIVN+G GF+ SKILRLV++R+GFNIPV+V+V NGI+GRDA
Sbjct: 81  DAVNEVVDKVLSEPIRPYFAIVNIGCGFDPSKILRLVKRRVGFNIPVVVTVNNGIIGRDA 140

Query: 146 LTDEFKEVKWGALFSGIDSEAYARNLNEGIVLTVGYLPGLKVEAIPLRRPPKTPQEPWID 205
           +TDEFKEVKWGALFSGID E YAR++NEGIVLT+G LPGLKVEAIPL RP KTPQEP +D
Sbjct: 141 VTDEFKEVKWGALFSGIDDEEYARHINEGIVLTIGCLPGLKVEAIPLIRPAKTPQEPCVD 200

Query: 206 NFVMDIKEYSASVS 219
           +F MDIKEYSASVS
Sbjct: 201 SFSMDIKEYSASVS 214


>Medtr3g099090.1 | F-box/LRR plant protein | HC |
           chr3:45413956-45423808 | 20130731
          Length = 535

 Score =  318 bits (816), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 151/194 (77%), Positives = 175/194 (90%)

Query: 26  DSIMGVGLLNDDLLQNILTRLPALSFASAACVSKTWNSVSNRILSRPKLSSALSLNPSLT 85
           D I G+ +L+DDLL NI TRLPA+SFASA CV+K+WNSV NRI+SRPKL+SALSLNPSL 
Sbjct: 21  DPITGINVLSDDLLLNIFTRLPAISFASATCVNKSWNSVCNRIISRPKLASALSLNPSLR 80

Query: 86  DAVNEVLHKVLAEPIRPYFAIVNVGSGFESSKILRLVRKRLGFNIPVIVSVTNGIMGRDA 145
           DAVNEV+ KVL+EPIRPYFAIVN+G GF+ SKILRLV++R+GFNIPV+V+V NGI+GRDA
Sbjct: 81  DAVNEVVDKVLSEPIRPYFAIVNIGCGFDPSKILRLVKRRVGFNIPVVVTVNNGIIGRDA 140

Query: 146 LTDEFKEVKWGALFSGIDSEAYARNLNEGIVLTVGYLPGLKVEAIPLRRPPKTPQEPWID 205
           +TDEFKEVKWGALFSGID E YAR++NEGIVLT+G LPGLKVEAIPL RP KTPQEP +D
Sbjct: 141 VTDEFKEVKWGALFSGIDDEEYARHINEGIVLTIGCLPGLKVEAIPLIRPAKTPQEPCVD 200

Query: 206 NFVMDIKEYSASVS 219
           +F MDIKEYSASVS
Sbjct: 201 SFSMDIKEYSASVS 214