Miyakogusa Predicted Gene
- Lj0g3v0090719.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0090719.1 Non Characterized Hit- tr|I1NVI5|I1NVI5_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,52.81,3e-19,REGULATOR OF CHROMOSOME CONDENSATION (RCC1),NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; BRX,Bre,CUFF.4915.1
(169 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g089900.1 | regulator of chromosome condensation (RCC1) fa... 263 7e-71
Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat ... 110 6e-25
Medtr8g019620.2 | brevis radix-like protein | HC | chr8:6946947-... 96 2e-20
Medtr8g019620.1 | brevis radix-like protein | HC | chr8:6946947-... 96 2e-20
Medtr2g041170.1 | brevis radix-like protein | HC | chr2:18039563... 90 8e-19
Medtr3g064560.1 | regulator of chromosome condensation (RCC1) fa... 86 2e-17
Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat ... 84 9e-17
Medtr8g071220.1 | brevis radix-like protein | HC | chr8:30217921... 82 4e-16
Medtr5g026970.1 | brevis RADIX-like protein | HC | chr5:11177365... 73 1e-13
Medtr5g026970.2 | brevis RADIX-like protein | HC | chr5:11177292... 73 2e-13
Medtr7g072410.1 | regulator of chromosome condensation (RCC1) fa... 67 8e-12
Medtr4g029410.1 | regulator of chromosome condensation (RCC1) fa... 65 2e-11
Medtr1g042800.1 | chromosome condensation regulator RCC1 repeat ... 53 1e-07
>Medtr5g089900.1 | regulator of chromosome condensation (RCC1) family
protein | HC | chr5:39105074-39114126 | 20130731
Length = 1117
Score = 263 bits (671), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 130/168 (77%), Positives = 141/168 (83%), Gaps = 4/168 (2%)
Query: 1 MAERLPVGAIRNVKSPSLASFGSNPSSNEIGYASIDRLNIQATSPEADLAXXXXXXXXXX 60
MAERLPVG ++VKSPS+ASFGSN E+ +A+IDRLNIQATSPEADL
Sbjct: 953 MAERLPVGTAKSVKSPSIASFGSN----ELSFAAIDRLNIQATSPEADLTGSNTQLLSNG 1008
Query: 61 XXTVSNRNAGHTKQSQSDSNNRNGSRTKDSESRNESEWVEQDEPGVYITLTSLPGGVKDL 120
TVSNR+ G KQSQSDS NRNGSRTKDSESR+E+EWVEQDEPGVYITLTSLPGGV DL
Sbjct: 1009 SSTVSNRSTGQNKQSQSDSTNRNGSRTKDSESRSETEWVEQDEPGVYITLTSLPGGVIDL 1068
Query: 121 KRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSSVGVGSDDLA 168
KRVRFSRKRFSEKQAE WWAENR RVYEQYNVRM+DKSSVGVGS+DLA
Sbjct: 1069 KRVRFSRKRFSEKQAENWWAENRVRVYEQYNVRMVDKSSVGVGSEDLA 1116
>Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat
protein | HC | chr6:12109737-12119303 | 20130731
Length = 1118
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 70/96 (72%)
Query: 64 VSNRNAGHTKQSQSDSNNRNGSRTKDSESRNESEWVEQDEPGVYITLTSLPGGVKDLKRV 123
V R++G+ + +S + N + S ++ ++EW+EQ EPGVYITL ++ G +DLKRV
Sbjct: 1006 VEGRDSGNFRDDESGVKSTNAALATSSNNQVDAEWIEQYEPGVYITLVAMHDGTRDLKRV 1065
Query: 124 RFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSS 159
RFSR+RF E QAE WW+EN+ +VYE+YNVR +DKSS
Sbjct: 1066 RFSRRRFGENQAENWWSENKDKVYEKYNVRSVDKSS 1101
>Medtr8g019620.2 | brevis radix-like protein | HC |
chr8:6946947-6951587 | 20130731
Length = 369
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 30 IGYASIDRLNIQATSPE-----ADLAXXXXXXXXXXXXTVSNRNAGHTKQSQSDSNNRNG 84
+GY+S D L+ P+ + L T + + S S+ + +G
Sbjct: 243 MGYSSSDSLDHHHMQPQPCYETSGLPSKSNLSNIGVPKTERSSIDASVRTSSSEEEDHSG 302
Query: 85 SRTKDSESRNESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRA 144
+ + S E+EWVEQDEPGVYIT+ +LPGG ++L+RVRFSR++F E A WW ENRA
Sbjct: 303 ELSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSREKFGEMHARLWWEENRA 362
Query: 145 RVYEQY 150
R+ EQY
Sbjct: 363 RIQEQY 368
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 48/66 (72%)
Query: 97 EWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMID 156
EWV Q EPGV IT SLP G DLKR+RFSR+ F++ QA++WWAEN +V E YNV+ +
Sbjct: 138 EWVAQVEPGVLITFVSLPEGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFN 197
Query: 157 KSSVGV 162
+ +V +
Sbjct: 198 QEAVPL 203
>Medtr8g019620.1 | brevis radix-like protein | HC |
chr8:6946947-6951530 | 20130731
Length = 369
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 30 IGYASIDRLNIQATSPE-----ADLAXXXXXXXXXXXXTVSNRNAGHTKQSQSDSNNRNG 84
+GY+S D L+ P+ + L T + + S S+ + +G
Sbjct: 243 MGYSSSDSLDHHHMQPQPCYETSGLPSKSNLSNIGVPKTERSSIDASVRTSSSEEEDHSG 302
Query: 85 SRTKDSESRNESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRA 144
+ + S E+EWVEQDEPGVYIT+ +LPGG ++L+RVRFSR++F E A WW ENRA
Sbjct: 303 ELSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSREKFGEMHARLWWEENRA 362
Query: 145 RVYEQY 150
R+ EQY
Sbjct: 363 RIQEQY 368
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 48/66 (72%)
Query: 97 EWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMID 156
EWV Q EPGV IT SLP G DLKR+RFSR+ F++ QA++WWAEN +V E YNV+ +
Sbjct: 138 EWVAQVEPGVLITFVSLPEGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFN 197
Query: 157 KSSVGV 162
+ +V +
Sbjct: 198 QEAVPL 203
>Medtr2g041170.1 | brevis radix-like protein | HC |
chr2:18039563-18048357 | 20130731
Length = 352
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 54/70 (77%)
Query: 81 NRNGSRTKDSESRNESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWA 140
+R+G + + S +SEWVE+DEPGVYIT+ S+PGG ++++RVRFSR++F E A WW
Sbjct: 282 DRSGDLSMSNASDPDSEWVEEDEPGVYITIRSMPGGKREIRRVRFSREKFGEMHARLWWE 341
Query: 141 ENRARVYEQY 150
ENRARV+ QY
Sbjct: 342 ENRARVHAQY 351
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 97 EWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMID 156
EWV Q EPGV IT SLP G DLKR+RFSR F++ QA++WWAEN +V E YNV+ ++
Sbjct: 118 EWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRLN 177
Query: 157 KSSVGV 162
+ + +
Sbjct: 178 RQAFPL 183
>Medtr3g064560.1 | regulator of chromosome condensation (RCC1) family
protein | HC | chr3:29089374-29095433 | 20130731
Length = 1032
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 97 EWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNV 152
EWVEQ E GVYITLT P G K LKRVRFSRKRFS+K+AE+WW EN+ +V+ +Y +
Sbjct: 974 EWVEQYENGVYITLTKSPSGEKGLKRVRFSRKRFSQKEAERWWEENQTKVHHKYEI 1029
>Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat
protein | HC | chr1:44778263-44766991 | 20130731
Length = 1121
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 63 TVSNRNAGHTKQSQSDSNNRNGSRTKDSESRNESEWVEQDEPGVYITLTSLPGGVKDLKR 122
T RN+G+ + +S S +RN +S ++ E+EW+EQ EPGVYITL ++ G +DL+R
Sbjct: 1011 TFDGRNSGNFRDDESGSRSRNDVLAANS-NQVEAEWIEQYEPGVYITLVAMRDGTRDLRR 1069
Query: 123 VRFSRKRFSEKQAEQWWAENRARVYEQYNVR 153
VRFSR+RF E QAE WW+ENR RVYE+YNVR
Sbjct: 1070 VRFSRRRFGENQAETWWSENRDRVYERYNVR 1100
>Medtr8g071220.1 | brevis radix-like protein | HC |
chr8:30217921-30223478 | 20130731
Length = 333
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 44/59 (74%)
Query: 92 SRNESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQY 150
S ESEWVEQDEPGVYIT+ L G ++L+RVRFSR+RF E A+ WW +NR R+ QY
Sbjct: 274 SEMESEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEDNRERIQAQY 332
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 97 EWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMID 156
EW+ Q EPGV+IT SLP G DLKR+RFSR+ F++ QA++WW EN R+ E YNV+ +
Sbjct: 133 EWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQKWWGENYDRIMELYNVQRFN 192
Query: 157 KSSVGVGS 164
+ ++ S
Sbjct: 193 RQALNTPS 200
>Medtr5g026970.1 | brevis RADIX-like protein | HC |
chr5:11177365-11173027 | 20130731
Length = 333
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 43/56 (76%)
Query: 95 ESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQY 150
+SEW+EQ EPG+++T+ P G +L+R++FSR+RF + +A +WW ENR R+ EQY
Sbjct: 276 DSEWIEQVEPGIFVTVRQYPDGNNELRRIKFSRQRFGDAEARKWWDENRDRLREQY 331
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 97 EWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMID 156
EWV + EPGV +T SLP G DLKR+RF+R+ F + QA WW EN R+ E YNVR +
Sbjct: 134 EWVAEVEPGVDVTFLSLPDGGNDLKRIRFNREIFDKWQARVWWGENFDRLRELYNVRSFN 193
Query: 157 KSSV 160
++
Sbjct: 194 SQAL 197
>Medtr5g026970.2 | brevis RADIX-like protein | HC |
chr5:11177292-11173029 | 20130731
Length = 255
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 43/56 (76%)
Query: 95 ESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQY 150
+SEW+EQ EPG+++T+ P G +L+R++FSR+RF + +A +WW ENR R+ EQY
Sbjct: 198 DSEWIEQVEPGIFVTVRQYPDGNNELRRIKFSRQRFGDAEARKWWDENRDRLREQY 253
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 97 EWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMID 156
EWV + EPGV +T SLP G DLKR+RF+R+ F + QA WW EN R+ E YNVR +
Sbjct: 56 EWVAEVEPGVDVTFLSLPDGGNDLKRIRFNREIFDKWQARVWWGENFDRLRELYNVRSFN 115
Query: 157 KSSV 160
++
Sbjct: 116 SQAL 119
>Medtr7g072410.1 | regulator of chromosome condensation (RCC1) family
protein | HC | chr7:26894031-26888474 | 20130731
Length = 1108
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 72 TKQSQSDSNNRNGSRTKDSESRNESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFS 131
++ S++DS N SR S ++ V+Q EPGVY+TL P G + K V+FS+++F
Sbjct: 974 SQSSENDSRTLNPSR---SVREGNTQVVDQFEPGVYVTLIVRPDGKRLFKSVKFSKRKFR 1030
Query: 132 EKQAEQWWAENRARVYEQYNVRMIDKSSV 160
E QAE+WW N+ RV+ +Y+ + + +V
Sbjct: 1031 EHQAEEWWTLNKDRVHARYSPQATNPENV 1059
>Medtr4g029410.1 | regulator of chromosome condensation (RCC1) family
protein, putative | HC | chr4:10165501-10157053 |
20130731
Length = 1045
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 77 SDSNNRNGSRTKDS---ESRNESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEK 133
S N+ N S + DS E E+++ E+ + GVY LT G+K KRV+FS++RF++
Sbjct: 943 SPQNSENSSTSLDSSRHERPPETQFFEKFQSGVYALLTLRADGIKIFKRVKFSKRRFTDT 1002
Query: 134 QAEQWWAENRARVYEQY 150
QAE+WW +N+ RV +Y
Sbjct: 1003 QAEEWWRQNKGRVLRKY 1019
>Medtr1g042800.1 | chromosome condensation regulator RCC1 repeat
protein | HC | chr1:16011888-16018401 | 20130731
Length = 1076
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 77 SDSNNRNGSRTKDSES---RNESEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEK 133
S N+ N R+++S E+ +EQ E GVYIT + G K KRVRFSR+RFSE+
Sbjct: 969 SPPNSENSIRSQESSRPVREGETSVIEQFERGVYITAIVIADGSKIFKRVRFSRRRFSEQ 1028
Query: 134 QAEQWWAENRARVYEQYNVRMIDKSSV 160
QAE+WW+ N+ RVY +YN I+ S+
Sbjct: 1029 QAEEWWSNNKDRVYRRYNPPPINNESI 1055