Miyakogusa Predicted Gene

Lj0g3v0090639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0090639.1 Non Characterized Hit- tr|F6GYE7|F6GYE7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40.33,3e-19,seg,NULL,CUFF.4910.1
         (172 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g048340.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   172   1e-43

>Medtr2g048340.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr2:21279528-21285135 | 20130731
          Length = 660

 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 117/178 (65%), Gaps = 9/178 (5%)

Query: 1   MNEPTEAHPTHKQVTNELAETQHNVAPNNTGRGASWLRKQSWTQLVSPSNNSFSISQILP 60
           + EP EA PT+KQV  E AETQHN+AP  TG G SW +K+SWTQL + +N+ FS+SQ+LP
Sbjct: 485 IEEPAEAQPTNKQVITEPAETQHNIAPKITGTGVSWWQKKSWTQLANENNSPFSLSQLLP 544

Query: 61  DITFPEPIFKEPVVDPANSDDCKHGGVNMDTTN----EAFN-GEIIPEKSQHTDASD-TA 114
           DI+FPE   KEP++ PA S +CKH G + +T +    + FN GEI+P  S+H    D  +
Sbjct: 545 DISFPEQTAKEPILYPAGSSECKHNGADKNTVDGTVTDGFNLGEIVPGNSEHAGTDDIVS 604

Query: 115 APVVEQKTETSPGDDDTSTADIEIGETCSFMRSAASLKEWXXXXXXXXXXXXXXRGEK 172
           APVVE+  ETSP +    +A++EIGETCSFMRSA SLKEW              R EK
Sbjct: 605 APVVEKIVETSPRE---RSANVEIGETCSFMRSADSLKEWKKAKAAVSGSLKRKRSEK 659