Miyakogusa Predicted Gene

Lj0g3v0089819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0089819.1 Non Characterized Hit- tr|F6I2E4|F6I2E4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,75,0.000008,seg,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; Glucocorticoid receptor-like
(D,NODE_53013_length_993_cov_46.171200.path2.1
         (223 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083230.1 | thymidine kinase-like protein | HC | chr3:3756...   371   e-103
Medtr3g082350.1 | thymidine kinase-like protein | LC | chr3:3716...    90   2e-18
Medtr3g083240.1 | thymidine kinase-like protein | LC | chr3:3756...    83   2e-16

>Medtr3g083230.1 | thymidine kinase-like protein | HC |
           chr3:37562472-37564655 | 20130731
          Length = 226

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/212 (86%), Positives = 193/212 (91%), Gaps = 3/212 (1%)

Query: 13  GEIHLFVGPMFAGKTTSLLRRIKSEVDTGRNVVMLKSSKDTRYAIDSVVSHDGVKFPCWA 72
           GEIHLFVGPMFAGKTTSLLRRIKSEVD GRNV MLKSSKD RYA+DSVV+HDG+KFPCWA
Sbjct: 17  GEIHLFVGPMFAGKTTSLLRRIKSEVDNGRNVAMLKSSKDNRYAVDSVVTHDGIKFPCWA 76

Query: 73  LPDLMSFKEKYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAADVDGKIVVVAGLDGDYLRR 132
           LPDLM FK+KYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAAD DGKIVVVAGLDGDY+RR
Sbjct: 77  LPDLMLFKDKYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAADEDGKIVVVAGLDGDYMRR 136

Query: 133 SFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRKKIEETQTELIGGADLYMPVCRNHYR 192
           SFGSVLHIIP+ADTVTKLTARCELCGKRAFFTLR K  E QTELIGGADLYMPVCR+HY 
Sbjct: 137 SFGSVLHIIPIADTVTKLTARCELCGKRAFFTLR-KTGEKQTELIGGADLYMPVCRHHYV 195

Query: 193 NSQVVMEAA-RSVLESQKVISDSLLEAAAPVV 223
           N QVV+EAA +SV  SQKV   SL+E  APVV
Sbjct: 196 NGQVVVEAAMKSVFGSQKVGCGSLIE-TAPVV 226


>Medtr3g082350.1 | thymidine kinase-like protein | LC |
           chr3:37162914-37161261 | 20130731
          Length = 109

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 51/66 (77%), Gaps = 5/66 (7%)

Query: 131 RRSFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRKKIEETQTELIGGADLYMPVCRNH 190
           RR+FG V HII  AD++TKLTARCELC     FTLRK  E+ QTELIGGADLYMPVC +H
Sbjct: 8   RRTFGFVPHIIATADSITKLTARCELC----IFTLRKTGEK-QTELIGGADLYMPVCSHH 62

Query: 191 YRNSQV 196
           Y N QV
Sbjct: 63  YVNGQV 68



 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 35/57 (61%), Gaps = 12/57 (21%)

Query: 104 DLYDFCCKAADVDGKIVVVAGLDGDYLRRSFGSVLHIIPLADTVTKLTARCELCGKR 160
           DLY   C    V+G++            RSFGSVLHIIP+A+T TKLTARCELC  R
Sbjct: 53  DLYMPVCSHHYVNGQV------------RSFGSVLHIIPIAETATKLTARCELCSVR 97


>Medtr3g083240.1 | thymidine kinase-like protein | LC |
           chr3:37565351-37566309 | 20130731
          Length = 134

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 44/53 (83%), Gaps = 1/53 (1%)

Query: 130 LRRSFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRKKIEETQTELIGGADL 182
           L RSFGSVLHI P+A  VTKL ARCELCGK AFFTLR K+E  QTELIGGADL
Sbjct: 83  LLRSFGSVLHITPIAHIVTKLAARCELCGKHAFFTLR-KMEGKQTELIGGADL 134