Miyakogusa Predicted Gene

Lj0g3v0089459.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0089459.1 tr|G7IHS5|G7IHS5_MEDTR Protein
farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
OS,83.28,0,PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT,NULL; PROTEIN
FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANY,CUFF.4824.1
         (329 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g098650.1 | protein prenyltransferase alpha subunit repeat...   567   e-162
Medtr3g100110.1 | RAB geranylgeranyl transferase alpha protein |...    82   6e-16

>Medtr2g098650.1 | protein prenyltransferase alpha subunit repeat
           protein | HC | chr2:42227663-42231477 | 20130731
          Length = 333

 Score =  567 bits (1462), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/323 (83%), Positives = 294/323 (91%)

Query: 6   ERVRLRDRAEWSDVTPVPQNDGPNPVVPISYTEDFAEVMDYFRAIYLANEHSSRALSLTA 65
           +RV LR R EWSDVTP+PQN+GPNPVVPI+Y+E+F+EVMDYFRA+Y ANE SSRALSLTA
Sbjct: 11  DRVPLRLRPEWSDVTPIPQNNGPNPVVPINYSEEFSEVMDYFRAVYFANELSSRALSLTA 70

Query: 66  EVIHFNAGNYTVWHFRRLLLESLKVDLHGELEYVERVASANSKNYQIWHHRRWVAEKLGV 125
           E I  NAGNYTVWHFRR LLESLKVDLH E E+VERVAS NSKNYQIWHHRRWVAEKLG+
Sbjct: 71  EAISLNAGNYTVWHFRRSLLESLKVDLHVEREFVERVASGNSKNYQIWHHRRWVAEKLGL 130

Query: 126 EARHIELEFTRKILSVDAKHYHAWSHRQWVLQTLGGWEDELNYCSQLLEEDIFNNSAWNQ 185
           EAR+ ELEFT+KILS+DAKHYHAWSHRQWVLQTLGGWEDELNYCS+LL EDIFNNSAWNQ
Sbjct: 131 EARNSELEFTKKILSIDAKHYHAWSHRQWVLQTLGGWEDELNYCSELLAEDIFNNSAWNQ 190

Query: 186 RYFVISRSPFLGGLKAMRESEVLYTVEAIIASPENESSWRYLRGLFKGETALYVNDPQVP 245
           RYFVI+RSPFLGG+KAMRESEVLYT+EAII+ PENESSWRYLRGL+K E  LYVND QV 
Sbjct: 191 RYFVITRSPFLGGIKAMRESEVLYTIEAIISYPENESSWRYLRGLYKDEATLYVNDTQVS 250

Query: 246 SVCLKILNTKSNYLFALSTLLDLISLGYQPNEDFRDAIEAIKTSDFDKQDHDIARNICSI 305
           SVCLKIL TKSNYLFALSTLLDLI LGYQPNEDFRDAIEA++TSD ++QD DIAR ICSI
Sbjct: 251 SVCLKILRTKSNYLFALSTLLDLICLGYQPNEDFRDAIEALRTSDNEEQDSDIARTICSI 310

Query: 306 LEQVDPIRANYWIWRKCRVSQVA 328
           LEQVDPIR NYW+WRK R+ Q A
Sbjct: 311 LEQVDPIRVNYWVWRKSRLPQAA 333


>Medtr3g100110.1 | RAB geranylgeranyl transferase alpha protein | HC
           | chr3:45994485-45989935 | 20130731
          Length = 705

 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 20/205 (9%)

Query: 41  AEVMDYFRAIYLANE----HSSRALSLTAEVIHFNAGNYTVWHFRRLLLE---------S 87
           AE +   ++ +LAN     ++  AL L+A+++  N   YT W++R+L ++         S
Sbjct: 21  AEKLHSLQSQFLANHQNRIYTKEALDLSAKLLEINPECYTAWNYRKLAVQHNLSESNSDS 80

Query: 88  LKVDLHGELEYVERVASANSKNYQIWHHRRWVAEKLGVEARHIELEFTRKILSVDAKHYH 147
                  EL+ VE     N K+Y  WHHR+WV  K G  +   EL         DA+++H
Sbjct: 81  DASLFDQELKVVENALKKNFKSYGAWHHRKWVLSK-GHSSIDNELRLLNDFQKADARNFH 139

Query: 148 AWSHRQWVLQTLG-GWEDELNYCSQLLEEDIFNNSAWNQRYFVIS-----RSPFLGGLKA 201
           AW++R++V   +    EDEL Y  +++  +  N SAW+ R  ++S     ++      + 
Sbjct: 140 AWNYRRFVTALMKISDEDELKYTEKVIGVNFSNYSAWHNRSVLLSTLFKRKAEGFSHKEK 199

Query: 202 MRESEVLYTVEAIIASPENESSWRY 226
           + + E  Y   AI    +++S W Y
Sbjct: 200 VLQEEYKYVHSAIFTDSDDQSGWFY 224