Miyakogusa Predicted Gene

Lj0g3v0089409.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0089409.1 Non Characterized Hit- tr|I1M869|I1M869_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8328
PE=,47.79,5e-19,dsRNA-binding domain-like,NULL; dsrm,Double-stranded
RNA-binding; no description,Double-stranded RNA,CUFF.4813.1
         (145 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g007820.1 | double-stranded RNA-binding motif protein | HC...    77   5e-15
Medtr4g007820.2 | double-stranded RNA-binding motif protein | HC...    77   5e-15
Medtr5g079490.1 | double-stranded RNA-binding motif protein | LC...    77   6e-15

>Medtr4g007820.1 | double-stranded RNA-binding motif protein | HC |
           chr4:1278710-1274464 | 20130731
          Length = 320

 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 1   MKVGMPTYNT-RNIEGLPHLFQSSVVFNGTNYRGDTARNKKDAEQLAARAAIISILGDSR 59
           +++ +PTYN+   IE +P+ F  ++  NGT+Y G  AR K DAE+LAARAAI+SILG+S 
Sbjct: 124 LRIQLPTYNSVEYIEVIPY-FLCTLDLNGTSYTGVAARRKNDAEELAARAAILSILGNSN 182

Query: 60  SGTLY-EIVKSKSKVFAAVRPDSSQ 83
           SG L  +I+K+K+++  +++P + Q
Sbjct: 183 SGVLLAQIIKTKAELLDSIKPKALQ 207


>Medtr4g007820.2 | double-stranded RNA-binding motif protein | HC |
           chr4:1278710-1274464 | 20130731
          Length = 320

 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 1   MKVGMPTYNT-RNIEGLPHLFQSSVVFNGTNYRGDTARNKKDAEQLAARAAIISILGDSR 59
           +++ +PTYN+   IE +P+ F  ++  NGT+Y G  AR K DAE+LAARAAI+SILG+S 
Sbjct: 124 LRIQLPTYNSVEYIEVIPY-FLCTLDLNGTSYTGVAARRKNDAEELAARAAILSILGNSN 182

Query: 60  SGTLY-EIVKSKSKVFAAVRPDSSQ 83
           SG L  +I+K+K+++  +++P + Q
Sbjct: 183 SGVLLAQIIKTKAELLDSIKPKALQ 207


>Medtr5g079490.1 | double-stranded RNA-binding motif protein | LC |
           chr5:33978474-33982314 | 20130731
          Length = 357

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 3/95 (3%)

Query: 1   MKVGMPTYNTRNIEGLPHLFQSSVVFNGTNYRGDTARNKKDAEQLAARAAIISILGDSRS 60
           + + +PTY +   + +   F  ++  NGT+Y GD AR KKDA +LAARAAI+SILG+S S
Sbjct: 124 LSIQLPTYKSVEYKEVIPYFVCTLDLNGTSYTGDAARRKKDAVELAARAAILSILGNSNS 183

Query: 61  GTLY-EIVKSKSKVFAAVRPDSSQ--CIEASTVPD 92
           G L  +I+K+K+K+F + +P + Q  C     +P+
Sbjct: 184 GVLLAQIIKTKAKLFDSTKPKALQPTCDSVLVLPE 218