Miyakogusa Predicted Gene

Lj0g3v0088669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0088669.1 tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase
Q1 OS=Medicago truncatula GN=MTR_2g006440 PE=4
SV=,68.42,0.000000000000004,seg,NULL,TC70316.path1.1
         (58 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g006440.1 | ATP-dependent DNA helicase RecQ family protein...    66   7e-12

>Medtr2g006440.1 | ATP-dependent DNA helicase RecQ family protein | HC
            | chr2:578880-586948 | 20130731
          Length = 1159

 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 34/57 (59%)

Query: 2    TVKRQTKRTEIYDSEEEDYYHGCXXXXXXXXXXXXXXXXKTPCTNAGGRVLPQWTGS 58
            TVKRQ K+ EIY+SEEEDYYHGC                K   TNA GRVLPQWT S
Sbjct: 1103 TVKRQIKKAEIYESEEEDYYHGCLDEDLDCIDIDNVVLDKLTGTNAAGRVLPQWTAS 1159