Miyakogusa Predicted Gene

Lj0g3v0087929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087929.1 Non Characterized Hit- tr|I1QFD0|I1QFD0_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,53.41,3e-17,FAMILY NOT NAMED,NULL; zf-LSD1,Zinc finger,
LSD1-type; LSD1: zinc finger domain, LSD1 subclass,Zinc ,CUFF.4702.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g089310.1 | LSD1-type zinc finger protein | HC | chr8:3710...   169   4e-43
Medtr8g089310.2 | LSD1-type zinc finger protein | HC | chr8:3710...   168   8e-43
Medtr8g089310.3 | LSD1-type zinc finger protein | HC | chr8:3710...   168   1e-42
Medtr4g098500.3 | LSD1-type zinc finger protein | HC | chr4:4058...   137   2e-33
Medtr4g098500.1 | LSD1-type zinc finger protein | HC | chr4:4058...   137   3e-33
Medtr4g098500.2 | LSD1-type zinc finger protein | HC | chr4:4058...   137   3e-33
Medtr2g047838.1 | LSD1-type zinc finger protein | HC | chr2:2090...   129   8e-31
Medtr4g088850.1 | LSD1-type zinc finger protein | HC | chr4:3545...    57   5e-09
Medtr4g088850.2 | LSD1-type zinc finger protein | HC | chr4:3545...    56   8e-09

>Medtr8g089310.1 | LSD1-type zinc finger protein | HC |
           chr8:37102205-37109257 | 20130731
          Length = 223

 Score =  169 bits (429), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/88 (94%), Positives = 85/88 (96%), Gaps = 1/88 (1%)

Query: 1   MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
           MQSQLVCNGCR+ LLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGA 
Sbjct: 48  MQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAT 107

Query: 61  SVRCSCCHTVNLAP-ANQVAHVPCGNCR 87
           SVRCSCCHTVNLAP +NQVAHVPCGNCR
Sbjct: 108 SVRCSCCHTVNLAPVSNQVAHVPCGNCR 135


>Medtr8g089310.2 | LSD1-type zinc finger protein | HC |
           chr8:37104096-37109257 | 20130731
          Length = 189

 Score =  168 bits (426), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 83/88 (94%), Positives = 85/88 (96%), Gaps = 1/88 (1%)

Query: 1   MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
           MQSQLVCNGCR+ LLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGA 
Sbjct: 14  MQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAT 73

Query: 61  SVRCSCCHTVNLAP-ANQVAHVPCGNCR 87
           SVRCSCCHTVNLAP +NQVAHVPCGNCR
Sbjct: 74  SVRCSCCHTVNLAPVSNQVAHVPCGNCR 101


>Medtr8g089310.3 | LSD1-type zinc finger protein | HC |
          chr8:37104112-37109257 | 20130731
          Length = 176

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/88 (94%), Positives = 85/88 (96%), Gaps = 1/88 (1%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          MQSQLVCNGCR+ LLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGA 
Sbjct: 1  MQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAT 60

Query: 61 SVRCSCCHTVNLAP-ANQVAHVPCGNCR 87
          SVRCSCCHTVNLAP +NQVAHVPCGNCR
Sbjct: 61 SVRCSCCHTVNLAPVSNQVAHVPCGNCR 88


>Medtr4g098500.3 | LSD1-type zinc finger protein | HC |
          chr4:40586719-40583419 | 20130731
          Length = 128

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 77/87 (88%), Gaps = 1/87 (1%)

Query: 2  QSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAAS 61
          QSQLVC+GCR++L+YP GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA S
Sbjct: 5  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 64

Query: 62 VRCSCCHTVNLA-PANQVAHVPCGNCR 87
          V+CSCCHTVNLA  ANQVAHV CGNCR
Sbjct: 65 VQCSCCHTVNLALEANQVAHVNCGNCR 91


>Medtr4g098500.1 | LSD1-type zinc finger protein | HC |
           chr4:40586734-40583419 | 20130731
          Length = 154

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 77/87 (88%), Gaps = 1/87 (1%)

Query: 2   QSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAAS 61
           QSQLVC+GCR++L+YP GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA S
Sbjct: 31  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 90

Query: 62  VRCSCCHTVNLA-PANQVAHVPCGNCR 87
           V+CSCCHTVNLA  ANQVAHV CGNCR
Sbjct: 91  VQCSCCHTVNLALEANQVAHVNCGNCR 117


>Medtr4g098500.2 | LSD1-type zinc finger protein | HC |
           chr4:40586719-40583419 | 20130731
          Length = 154

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 77/87 (88%), Gaps = 1/87 (1%)

Query: 2   QSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAAS 61
           QSQLVC+GCR++L+YP GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA S
Sbjct: 31  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 90

Query: 62  VRCSCCHTVNLA-PANQVAHVPCGNCR 87
           V+CSCCHTVNLA  ANQVAHV CGNCR
Sbjct: 91  VQCSCCHTVNLALEANQVAHVNCGNCR 117


>Medtr2g047838.1 | LSD1-type zinc finger protein | HC |
          chr2:20900056-20906924 | 20130731
          Length = 173

 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 78/91 (85%), Gaps = 4/91 (4%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPP---PGMDMSQLYCGGCRTLLMYTR 57
          M+S ++C GCR+ILLYPRGA+NVCCA+C+TIT V P   PGM+MSQLYCGGCRTLLM+ R
Sbjct: 1  MRSHIMCTGCRNILLYPRGASNVCCAVCSTITPVIPVLPPGMEMSQLYCGGCRTLLMHAR 60

Query: 58 GAASVRCSCCHTVNLAP-ANQVAHVPCGNCR 87
          GA +VRCSCC+T+NL P +NQ+ H+ CGNCR
Sbjct: 61 GATTVRCSCCNTINLVPDSNQMNHIRCGNCR 91


>Medtr4g088850.1 | LSD1-type zinc finger protein | HC |
           chr4:35453282-35456672 | 20130731
          Length = 133

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 3   SQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAASV 62
           +Q+VC  CR +L YP GA +V C+ C T+  V      + Q+ CG C  LLMY  GA  V
Sbjct: 41  AQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIV-LEADQVGQVKCGSCAVLLMYPYGAPQV 99

Query: 63  RCSCCHTVNLAPAN 76
           RCS C  V    A+
Sbjct: 100 RCSSCRFVTEIGAD 113



 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 41 MSQLYCGGCRTLLMYTRGAASVRCSCCHTVNLA-PANQVAHVPCGNC 86
           +Q+ CG CR LL Y  GA  V+CSCC TVN+   A+QV  V CG+C
Sbjct: 40 FAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSC 86


>Medtr4g088850.2 | LSD1-type zinc finger protein | HC |
           chr4:35453282-35456687 | 20130731
          Length = 149

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 3   SQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAASV 62
           +Q+VC  CR +L YP GA +V C+ C T+  V      + Q+ CG C  LLMY  GA  V
Sbjct: 41  AQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEAD-QVGQVKCGSCAVLLMYPYGAPQV 99

Query: 63  RCSCCHTV 70
           RCS C  V
Sbjct: 100 RCSSCRFV 107



 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 41 MSQLYCGGCRTLLMYTRGAASVRCSCCHTVNLA-PANQVAHVPCGNC 86
           +Q+ CG CR LL Y  GA  V+CSCC TVN+   A+QV  V CG+C
Sbjct: 40 FAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSC 86