Miyakogusa Predicted Gene

Lj0g3v0087919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087919.1 Non Characterized Hit- tr|I1R7S0|I1R7S0_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=3
SV=1,47.42,0.00000000000005,seg,NULL; A_tha_TIGR01569: plant integral
membrane protein T,Uncharacterised protein family UPF0497,,CUFF.4700.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC | chr8:37100...   129   8e-31
Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...   118   2e-27

>Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC |
           chr8:37100964-37099766 | 20130731
          Length = 194

 Score =  129 bits (325), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 1   MASENAEKLELGSSAVPDQTKPKKDWIXXXXXXXXXXXXXXXXXXXXXNKQSKNLVVATI 60
           MAS N EK+E G + VP +TKPKKDWI                     NKQ+K  VVATI
Sbjct: 1   MASGNEEKIESGFNDVP-ETKPKKDWILLSLRVVAFLAAVSATLVMSLNKQTKTFVVATI 59

Query: 61  GTNPITATISAKFHHTPAFVFFVIANGIASVHNMVVIALDFLGPRFDNQGLYLTLIAIFD 120
           G+ PIT  ++AKF HTPAFV+FV+ NGI S+HN+V+IA+  LGP+F N+GL L LIA+FD
Sbjct: 60  GSTPITVPLTAKFQHTPAFVYFVVPNGIVSLHNLVMIAMYILGPKFHNKGLQLALIAVFD 119


>Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0097:39509-37693 | 20130731
          Length = 201

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 80/123 (65%), Gaps = 2/123 (1%)

Query: 1   MASENAE-KLELGSSAVPDQTKPKKDWIXXXXXXXXXXXXXXXXXXXXXNKQSKNLVVAT 59
           MAS N E K+E G +    +TK K DWI                     NKQ+K+ V+ T
Sbjct: 1   MASRNGEEKVEHGFNDF-HETKKKNDWILLSLRVVAFFATAAATLVMALNKQTKSFVIGT 59

Query: 60  IGTNPITATISAKFHHTPAFVFFVIANGIASVHNMVVIALDFLGPRFDNQGLYLTLIAIF 119
           +G  P+TAT+SAKF+ TPAFVFFVIANG AS+HN+V+IALD LGP++D +GL L LIAI 
Sbjct: 60  VGNTPLTATLSAKFNQTPAFVFFVIANGNASLHNLVMIALDILGPQYDYKGLRLALIAIL 119

Query: 120 DMV 122
           DM+
Sbjct: 120 DML 122