Miyakogusa Predicted Gene

Lj0g3v0087739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087739.1 tr|Q0DLF3|Q0DLF3_ORYSJ Os05g0104900 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os05g01049,76.79,1e-18,U-box,U box domain; no description,Zinc
finger, RING/FYVE/PHD-type; PUTATIVE UNCHARACTERIZED
PROTEIN,CUFF.4688.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g011720.1 | ubiquitin-protein ligase | HC | chr8:3250050-3...   252   6e-68
Medtr7g059405.1 | armadillo/beta-catenin repeat protein | HC | c...    52   3e-07
Medtr7g078330.1 | plant U-box protein | HC | chr7:29618512-29621...    51   4e-07
Medtr3g466220.2 | ARM repeat RING/U-box protein | HC | chr3:2722...    51   4e-07
Medtr3g466220.3 | ARM repeat RING/U-box protein | HC | chr3:2722...    51   4e-07
Medtr3g466220.1 | ARM repeat RING/U-box protein | HC | chr3:2722...    51   4e-07
Medtr3g466220.4 | ARM repeat RING/U-box protein | HC | chr3:2722...    51   4e-07
Medtr2g018010.1 | plant U-box protein | HC | chr2:5283903-528693...    48   4e-06

>Medtr8g011720.1 | ubiquitin-protein ligase | HC |
           chr8:3250050-3245740 | 20130731
          Length = 277

 Score =  252 bits (644), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 119/140 (85%), Positives = 132/140 (94%), Gaps = 1/140 (0%)

Query: 1   MVEEIWQELAKAKYQEWERSSTKRSWELQSLKQACESALKEKHFLDGSDMEGFVDDATTT 60
           MVEEIWQE AKAKY+EWERSS++RSWELQ+LK+AC+SALKEKHFL GS+MEGFVDDATT+
Sbjct: 118 MVEEIWQEFAKAKYKEWERSSSQRSWELQNLKEACKSALKEKHFL-GSEMEGFVDDATTS 176

Query: 61  HLKQLEALEGVFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQK 120
           HLKQLEA+E VFNKAA+ DIP EVPD+LCC+ITLDIFHDPVITPSG TYERAVILDHLQK
Sbjct: 177 HLKQLEAVERVFNKAADDDIPTEVPDHLCCRITLDIFHDPVITPSGHTYERAVILDHLQK 236

Query: 121 VGRFDPVTREPLDPSQLVPN 140
           VG FDP+TREPLDPSQLV N
Sbjct: 237 VGEFDPITREPLDPSQLVSN 256


>Medtr7g059405.1 | armadillo/beta-catenin repeat protein | HC |
           chr7:21569455-21563475 | 20130731
          Length = 634

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query: 84  VPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLDPSQLVPN 140
           VP+   C I+LD+  DPVI  +G TYERA I   L    R  P+T++ L  S L+PN
Sbjct: 264 VPEEFRCPISLDLMKDPVIISTGQTYERACIKKWLDAGHRTCPITQQILSSSILIPN 320


>Medtr7g078330.1 | plant U-box protein | HC | chr7:29618512-29621844
           | 20130731
          Length = 646

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 32/57 (56%)

Query: 84  VPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLDPSQLVPN 140
           +P    C ITL+I  DPVI  SG TYER  I    +   +  P TR+PL+  QL PN
Sbjct: 274 IPHEFLCPITLEIMSDPVIIASGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPN 330


>Medtr3g466220.2 | ARM repeat RING/U-box protein | HC |
           chr3:27221042-27216195 | 20130731
          Length = 836

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 71  VFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTRE 130
           V  K ++++ P  VP   CC ++L++  DPVI  SG TYERA I + +       P T +
Sbjct: 220 VLLKQSQSNSPVPVPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQ 279

Query: 131 PLDPSQLVPN 140
            L  + L+PN
Sbjct: 280 TLAHTNLIPN 289


>Medtr3g466220.3 | ARM repeat RING/U-box protein | HC |
           chr3:27221042-27216195 | 20130731
          Length = 836

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 71  VFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTRE 130
           V  K ++++ P  VP   CC ++L++  DPVI  SG TYERA I + +       P T +
Sbjct: 220 VLLKQSQSNSPVPVPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQ 279

Query: 131 PLDPSQLVPN 140
            L  + L+PN
Sbjct: 280 TLAHTNLIPN 289


>Medtr3g466220.1 | ARM repeat RING/U-box protein | HC |
           chr3:27221042-27216195 | 20130731
          Length = 836

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 71  VFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTRE 130
           V  K ++++ P  VP   CC ++L++  DPVI  SG TYERA I + +       P T +
Sbjct: 220 VLLKQSQSNSPVPVPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQ 279

Query: 131 PLDPSQLVPN 140
            L  + L+PN
Sbjct: 280 TLAHTNLIPN 289


>Medtr3g466220.4 | ARM repeat RING/U-box protein | HC |
           chr3:27220979-27216195 | 20130731
          Length = 815

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 71  VFNKAAEADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTRE 130
           V  K ++++ P  VP   CC ++L++  DPVI  SG TYERA I + +       P T +
Sbjct: 199 VLLKQSQSNSPVPVPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQ 258

Query: 131 PLDPSQLVPN 140
            L  + L+PN
Sbjct: 259 TLAHTNLIPN 268


>Medtr2g018010.1 | plant U-box protein | HC | chr2:5283903-5286935 |
           20130731
          Length = 720

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 78  ADIPAEVPDYLCCKITLDIFHDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLDPSQL 137
           AD    VP   CC I+LD+  DPVI  +G TY+R+ I   + +     P T + L  ++L
Sbjct: 286 ADTFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRL 345

Query: 138 VPN 140
           VPN
Sbjct: 346 VPN 348