Miyakogusa Predicted Gene

Lj0g3v0087729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087729.1 Non Characterized Hit- tr|K4CAH0|K4CAH0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,75.86,5e-19,TPR,Tetratricopeptide repeat;
TPR_REGION,Tetratricopeptide repeat-containing domain; PUTATIVE
UNCHAR,CUFF.4687.1
         (60 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g011720.1 | ubiquitin-protein ligase | HC | chr8:3250050-3...   105   1e-23

>Medtr8g011720.1 | ubiquitin-protein ligase | HC |
          chr8:3250050-3245740 | 20130731
          Length = 277

 Score =  105 bits (261), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/58 (82%), Positives = 53/58 (91%)

Query: 1  MGPNATAAKQAEQLRIDGNSYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKR 58
          M PNA+A +QAE LR DGN+YFKK+RF AAIDAYTEAITLCPNVPVY+TNRALCHLKR
Sbjct: 1  MRPNASAMRQAELLRNDGNNYFKKNRFNAAIDAYTEAITLCPNVPVYFTNRALCHLKR 58