Miyakogusa Predicted Gene

Lj0g3v0087639.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087639.1 Non Characterized Hit- tr|I3S5U2|I3S5U2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.07,0,FYVE/PHD
zinc finger,Zinc finger, FYVE/PHD-type; ZF_PHD_1,Zinc finger,
PHD-type, conserved site; Bro,CUFF.4701.1
         (216 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g078310.1 | PHD finger and bromo-adjacent-like domain prot...   413   e-116
Medtr3g117270.1 | PHD finger and bromo-adjacent-like domain prot...   314   4e-86
Medtr3g117270.3 | PHD finger and bromo-adjacent-like domain prot...   305   2e-83
Medtr3g117270.4 | PHD finger and bromo-adjacent-like domain prot...   265   3e-71
Medtr3g117270.2 | PHD finger and bromo-adjacent-like domain prot...   261   4e-70
Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain prot...   239   9e-64
Medtr3g117280.1 | PHD finger and bromo-adjacent-like domain prot...   233   9e-62
Medtr5g097190.1 | DnaK family protein | LC | chr5:42551479-42556...   119   2e-27
Medtr6g464540.1 | bromo-adjacent-like (BAH) domain protein | HC ...    55   5e-08
Medtr5g010190.1 | bromo-adjacent-like (BAH) domain protein | HC ...    53   2e-07
Medtr5g010190.2 | bromo-adjacent-like (BAH) domain protein | HC ...    53   2e-07
Medtr8g098290.1 | bromo-adjacent-like (BAH) domain protein | HC ...    53   2e-07
Medtr8g098290.2 | bromo-adjacent-like (BAH) domain protein | HC ...    53   2e-07
Medtr8g099640.1 | origin recognition complex subunit 1 | HC | ch...    52   3e-07
Medtr8g098260.1 | transcription factor S-II, central domain prot...    52   4e-07

>Medtr2g078310.1 | PHD finger and bromo-adjacent-like domain protein
           | HC | chr2:32595275-32591772 | 20130731
          Length = 218

 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/216 (93%), Positives = 211/216 (97%)

Query: 1   MAKTRPGRKDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRV 60
           MAKTRPG+KDMDSYTI+GTNK+V+AGDCVLMRPSDTSKPPYVARVEKIEQD R+NV+VRV
Sbjct: 1   MAKTRPGKKDMDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVRVRV 60

Query: 61  RWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYY 120
           RWYYRPEESIGGRRQFHG KELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVG+EDYY
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGSEDYY 120

Query: 121 CRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEH 180
           CRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKL+H
Sbjct: 121 CRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDH 180

Query: 181 FVCSECSSDDDMKKPQATFHVSPGSDIKVEPKRRKR 216
           FVCSECSSDDD+KKPQA F VSPGSD KVEPKRRKR
Sbjct: 181 FVCSECSSDDDLKKPQAAFPVSPGSDGKVEPKRRKR 216


>Medtr3g117270.1 | PHD finger and bromo-adjacent-like domain protein
           | HC | chr3:54853329-54857739 | 20130731
          Length = 218

 Score =  314 bits (805), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 146/219 (66%), Positives = 180/219 (82%), Gaps = 4/219 (1%)

Query: 1   MAKTRPGRKDMDSYTIKGTNK--IVRAGDCVLMRPSDTSKPPYVARVEKIEQDTR-SNVK 57
           MAK +  +++++SY++K  NK   ++AGDCVLMRPSD SKP YVA++E IE D+R +NVK
Sbjct: 1   MAKPKAPKRNLESYSVKHMNKSVTIKAGDCVLMRPSDPSKPSYVAKIEGIEADSRGANVK 60

Query: 58  VRVRWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAE 117
           V VRWYYRPEESIGGRRQFHG KELFLSDHFDVQSA TIEGKC+VH FK+YTKL+ VG +
Sbjct: 61  VNVRWYYRPEESIGGRRQFHGSKELFLSDHFDVQSADTIEGKCVVHGFKSYTKLDAVGND 120

Query: 118 DYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKK 177
           D++CRFEY +ATGAF PDRVAVYCKCEMPYNPDDLMVQCEGC DW+HPAC+ MT+EEA++
Sbjct: 121 DFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAER 180

Query: 178 LEHFVCSECSSDDDMKKPQATFHVSPGSDIKVEPKRRKR 216
           L+HF C  CS  +  K+ Q +   +  +D KV+ KRR+R
Sbjct: 181 LDHFFCESCSV-EGQKQLQNSHSATRLADTKVDTKRRRR 218


>Medtr3g117270.3 | PHD finger and bromo-adjacent-like domain protein
           | HC | chr3:54853329-54857095 | 20130731
          Length = 211

 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 137/190 (72%), Positives = 164/190 (86%), Gaps = 3/190 (1%)

Query: 1   MAKTRPGRKDMDSYTIKGTNK--IVRAGDCVLMRPSDTSKPPYVARVEKIEQDTR-SNVK 57
           MAK +  +++++SY++K  NK   ++AGDCVLMRPSD SKP YVA++E IE D+R +NVK
Sbjct: 1   MAKPKAPKRNLESYSVKHMNKSVTIKAGDCVLMRPSDPSKPSYVAKIEGIEADSRGANVK 60

Query: 58  VRVRWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAE 117
           V VRWYYRPEESIGGRRQFHG KELFLSDHFDVQSA TIEGKC+VH FK+YTKL+ VG +
Sbjct: 61  VNVRWYYRPEESIGGRRQFHGSKELFLSDHFDVQSADTIEGKCVVHGFKSYTKLDAVGND 120

Query: 118 DYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKK 177
           D++CRFEY +ATGAF PDRVAVYCKCEMPYNPDDLMVQCEGC DW+HPAC+ MT+EEA++
Sbjct: 121 DFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAER 180

Query: 178 LEHFVCSECS 187
           L+HF C  CS
Sbjct: 181 LDHFFCESCS 190


>Medtr3g117270.4 | PHD finger and bromo-adjacent-like domain protein
           | HC | chr3:54853329-54857739 | 20130731
          Length = 165

 Score =  265 bits (677), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 122/165 (73%), Positives = 143/165 (86%), Gaps = 3/165 (1%)

Query: 1   MAKTRPGRKDMDSYTIKGTNK--IVRAGDCVLMRPSDTSKPPYVARVEKIEQDTR-SNVK 57
           MAK +  +++++SY++K  NK   ++AGDCVLMRPSD SKP YVA++E IE D+R +NVK
Sbjct: 1   MAKPKAPKRNLESYSVKHMNKSVTIKAGDCVLMRPSDPSKPSYVAKIEGIEADSRGANVK 60

Query: 58  VRVRWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAE 117
           V VRWYYRPEESIGGRRQFHG KELFLSDHFDVQSA TIEGKC+VH FK+YTKL+ VG +
Sbjct: 61  VNVRWYYRPEESIGGRRQFHGSKELFLSDHFDVQSADTIEGKCVVHGFKSYTKLDAVGND 120

Query: 118 DYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW 162
           D++CRFEY +ATGAF PDRVAVYCKCEMPYNPDDLMVQCEGC DW
Sbjct: 121 DFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDW 165


>Medtr3g117270.2 | PHD finger and bromo-adjacent-like domain protein
           | HC | chr3:54853383-54857559 | 20130731
          Length = 164

 Score =  261 bits (666), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 142/164 (86%), Gaps = 3/164 (1%)

Query: 1   MAKTRPGRKDMDSYTIKGTNK--IVRAGDCVLMRPSDTSKPPYVARVEKIEQDTR-SNVK 57
           MAK +  +++++SY++K  NK   ++AGDCVLMRPSD SKP YVA++E IE D+R +NVK
Sbjct: 1   MAKPKAPKRNLESYSVKHMNKSVTIKAGDCVLMRPSDPSKPSYVAKIEGIEADSRGANVK 60

Query: 58  VRVRWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAE 117
           V VRWYYRPEESIGGRRQFHG KELFLSDHFDVQSA TIEGKC+VH FK+YTKL+ VG +
Sbjct: 61  VNVRWYYRPEESIGGRRQFHGSKELFLSDHFDVQSADTIEGKCVVHGFKSYTKLDAVGND 120

Query: 118 DYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKD 161
           D++CRFEY +ATGAF PDRVAVYCKCEMPYNPDDLMVQCEGC D
Sbjct: 121 DFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSD 164


>Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain
           protein, putative | HC | chr2:38471494-38475361 |
           20130731
          Length = 453

 Score =  239 bits (611), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 139/191 (72%), Gaps = 5/191 (2%)

Query: 1   MAKTRPGRKDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRV 60
           M  TR G+++   YTI+GT+ +VRA DCVL+R +D  KP  +ARVEK EQD  + ++V V
Sbjct: 263 MGTTRQGKRN--KYTIRGTDTVVRAKDCVLLRRTDAIKP-IIARVEKFEQDNMNRMRVYV 319

Query: 61  RWYYRPEESIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYY 120
           R YYRPEE+I GR  FHG KELFLS+H+DV SA TIEGKC VH+ KNY KLE VGA DYY
Sbjct: 320 RKYYRPEETIEGRVCFHGDKELFLSNHYDVHSADTIEGKCFVHNLKNYMKLEVVGANDYY 379

Query: 121 CRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLE- 179
            RF Y A TGA TP+RV V CKCEMPYNPD LMV C  C + YHP CVGM  EEA K E 
Sbjct: 380 SRFWYNAFTGAMTPERVEVLCKCEMPYNPDRLMVLCGSCNERYHPKCVGMPFEEAMKSED 439

Query: 180 -HFVCSECSSD 189
             FVCS+CS D
Sbjct: 440 FRFVCSKCSPD 450


>Medtr3g117280.1 | PHD finger and bromo-adjacent-like domain protein
           | HC | chr3:54859053-54862407 | 20130731
          Length = 196

 Score =  233 bits (594), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 139/193 (72%), Gaps = 4/193 (2%)

Query: 24  RAGDCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRVRWYYRPEESIGGRRQFHGVKELF 83
           R GDCV MR S    P YVA +E+++ D+R    VRVRWYY PEE+  GRR FHG KEL 
Sbjct: 8   REGDCVRMRSSKPLIPTYVAIIEEMKADSRD---VRVRWYYWPEETKKGRRHFHGSKELI 64

Query: 84  LSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKC 143
           LSDHFDVQS  TIEGKC VHS K Y KL+ VG +D++CRF Y +ATGA TPD V VYCKC
Sbjct: 65  LSDHFDVQSVDTIEGKCTVHSLKKYMKLDVVGDDDFFCRFNYNSATGALTPDIVQVYCKC 124

Query: 144 EMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSDDDMKKPQATFHVSP 203
           EMPYNPD++MVQC+ C DW+HPAC+ MT+EEA+++++F C  CS  +  KK + +   + 
Sbjct: 125 EMPYNPDEVMVQCDHCTDWFHPACIDMTVEEAERIDNFSCESCSL-EVQKKLRGSHSATR 183

Query: 204 GSDIKVEPKRRKR 216
             D  V+ KRR+R
Sbjct: 184 LPDTNVDTKRRQR 196


>Medtr5g097190.1 | DnaK family protein | LC | chr5:42551479-42556009
           | 20130731
          Length = 368

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 10/129 (7%)

Query: 71  GGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKL---ENVGAEDYYCRFEYKA 127
            G + F G  ELF S   +VQS  TI  KC VH+FK+Y  L   +NVG  D+YCR++Y  
Sbjct: 15  AGDKDFIGEDELFYSSVREVQSVKTIISKCFVHTFKDYLNLCDLQNVGYLDFYCRYKYDP 74

Query: 128 ATGA-FTPD----RVAVYCKCEMPYNPDDLMVQCEG-CKDWYHPACVGMTIEEAKKLEHF 181
            TG  F P+    RV  +CKCE+P NPD  M+QCEG CK WYHP C+ MT E+A+ ++ F
Sbjct: 75  DTGTIFVPNSTTQRVVAHCKCELPRNPDYFMIQCEGRCKKWYHPPCLEMTEEQARLMKPF 134

Query: 182 VCS-ECSSD 189
           +C+ +C  D
Sbjct: 135 LCTADCKQD 143


>Medtr6g464540.1 | bromo-adjacent-like (BAH) domain protein | HC |
           chr6:22509641-22507190 | 20130731
          Length = 360

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 4   TRPGRKDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRVRWY 63
           ++ GRK   S+ +      +   D VL+ P    K P+VA ++ IEQ  + N+K+    +
Sbjct: 60  SKNGRKHFQSFELDKNRYTLE--DTVLLAPETQDKKPFVAIIKDIEQSLKGNLKITTHLF 117

Query: 64  YRPEESIGGRRQFHGVK-----ELFLSDHFDVQSAHTIEGKCIVHSFKNYTKL 111
           YRP+E    RR+ H  K     ELF S H  V  A  +   C VH    + KL
Sbjct: 118 YRPDE--AERRRGHTWKSKIKRELFYSFHQYVVPAENVMHTCAVHFIPVHKKL 168


>Medtr5g010190.1 | bromo-adjacent-like (BAH) domain protein | HC |
           chr5:2667413-2662178 | 20130731
          Length = 596

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 27  DCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRVRWYYRPEESI---GGRRQFHGVKELF 83
           D V++ P D  + PYVA ++ I Q    ++ V  +W+YRPEE+    GG  +    +ELF
Sbjct: 104 DPVMLVPEDKEQKPYVAIIKDIIQYFSGSIMVAGQWFYRPEEAEKKGGGSWKSCDTRELF 163

Query: 84  LSDHFDVQSAHTIEGKCIVH 103
            S H D   A ++  KC+VH
Sbjct: 164 YSFHRDEVPAESVMHKCVVH 183


>Medtr5g010190.2 | bromo-adjacent-like (BAH) domain protein | HC |
           chr5:2667413-2662178 | 20130731
          Length = 462

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 2   AKTRPGRKDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRVR 61
            K R  ++  +S+   G    +   D V++ P D  + PYVA ++ I Q    ++ V  +
Sbjct: 81  GKGRGRKRHYESFEFDGNQYSLE--DPVMLVPEDKEQKPYVAIIKDIIQYFSGSIMVAGQ 138

Query: 62  WYYRPEESI---GGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVH 103
           W+YRPEE+    GG  +    +ELF S H D   A ++  KC+VH
Sbjct: 139 WFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVH 183


>Medtr8g098290.1 | bromo-adjacent-like (BAH) domain protein | HC |
           chr8:40943275-40948326 | 20130731
          Length = 579

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 27  DCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRV--RWYYRPEESI---GGRRQFHGVKE 81
           D VL+ P    + PYVA ++ I Q    N  + +  +W+YRP+E+    GG  Q    +E
Sbjct: 107 DPVLLVPEVKDQKPYVAIIKDITQSINGNGSLMITGQWFYRPDEAEKKGGGSWQSVDTRE 166

Query: 82  LFLSDHFDVQSAHTIEGKCIVHSFKNYTKLEN 113
           LF S H D   A ++  KC+VH    + +L N
Sbjct: 167 LFYSFHRDEVPAESVMHKCVVHFVPIHKQLPN 198


>Medtr8g098290.2 | bromo-adjacent-like (BAH) domain protein | HC |
           chr8:40943322-40947559 | 20130731
          Length = 447

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 27  DCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRV--RWYYRPEESI---GGRRQFHGVKE 81
           D VL+ P    + PYVA ++ I Q    N  + +  +W+YRP+E+    GG  Q    +E
Sbjct: 107 DPVLLVPEVKDQKPYVAIIKDITQSINGNGSLMITGQWFYRPDEAEKKGGGSWQSVDTRE 166

Query: 82  LFLSDHFDVQSAHTIEGKCIVHSFKNYTKLEN 113
           LF S H D   A ++  KC+VH    + +L N
Sbjct: 167 LFYSFHRDEVPAESVMHKCVVHFVPIHKQLPN 198


>Medtr8g099640.1 | origin recognition complex subunit 1 | HC |
           chr8:42142602-42133661 | 20130731
          Length = 891

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 9   KDMDSYTIKGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRVRWYYRPEE 68
           KD+D        K+VR      MR    S   + AR+E I ++   +   RVRWY  PEE
Sbjct: 284 KDVDFPKPPKGKKLVRT-----MRQRLQSSDLWAARIESIWKEVDGSYWCRVRWYMIPEE 338

Query: 69  SIGGRRQFHGVKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAA 128
           +  GR+  +  +EL+ ++        ++   C V   K Y K  N G + + C +EY   
Sbjct: 339 TSVGRQPHNLSRELYRTNDLAKIEMESVLRHCYVMIPKEYAKASNEGDDVFLCEYEYDIQ 398

Query: 129 TGAF 132
             +F
Sbjct: 399 WHSF 402


>Medtr8g098260.1 | transcription factor S-II, central domain protein
           | LC | chr8:40956492-40966975 | 20130731
          Length = 1301

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 27  DCVLMRPSDTSKPPYVARVEKIEQDTRSNVKVRVRWYYRP---EESIGGRRQFHGVKELF 83
           D VL+ P    +  YVA ++ I Q     + +  +W+YRP   E+  GG  Q +  +EL+
Sbjct: 85  DTVLLEPDGKDEKAYVAIIKDITQSPNDTLMITGQWFYRPYEAEKKGGGTWQSNETRELY 144

Query: 84  LSDHFDVQSAHTIEGKCIVHSFKNYTKLEN 113
            S H D   A +++  C+VH    + +L N
Sbjct: 145 YSFHQDAVPAESVKHTCVVHFVPIHKQLPN 174