Miyakogusa Predicted Gene

Lj0g3v0087059.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087059.1 Non Characterized Hit- tr|I3SIQ2|I3SIQ2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.61,0,ARP2/3
COMPLEX 34 KDA SUBUNIT,Arp2/3 complex, 34kDa subunit p34-Arc;
P34-Arc,Arp2/3 complex, 34kDa s,CUFF.4635.1
         (256 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g070640.1 | Arp2/3 complex 34 kDa subunit | HC | chr8:2989...   462   e-130
Medtr1g045065.1 | actin-related protein 2/3 complex, protein | H...   169   3e-42
Medtr1g045065.3 | actin-related protein 2/3 complex, protein | H...   169   3e-42
Medtr1g045065.2 | actin-related protein 2/3 complex, protein | H...   147   1e-35

>Medtr8g070640.1 | Arp2/3 complex 34 kDa subunit | HC |
           chr8:29891539-29883331 | 20130731
          Length = 324

 Score =  462 bits (1189), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/256 (87%), Positives = 233/256 (91%)

Query: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHIXXXXXXXXX 60
           MILLQSHSRFLLQTLLNR QNIEKGVELDHHWVEFDDVRYHIQVSMKNP+I         
Sbjct: 1   MILLQSHSRFLLQTLLNRLQNIEKGVELDHHWVEFDDVRYHIQVSMKNPNIFLLSVSLPT 60

Query: 61  XXXETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120
              ETIFVCGLPFGAIEAIKA YG +VQILDPP+DGFNLTLKINLSK+PANQEQR A LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKAAYGSLVQILDPPRDGFNLTLKINLSKVPANQEQRQALLV 120

Query: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPVVALVHRPKESFFLLPQADKVTVVYPMR 180
           KVASVREVVLGAPLRVILKHLASR VAPDMDP+VALVHRPKESFF+ PQADKVTV+YPMR
Sbjct: 121 KVASVREVVLGAPLRVILKHLASRNVAPDMDPLVALVHRPKESFFVFPQADKVTVMYPMR 180

Query: 181 FNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSFV 240
           FNDSID+VLATSFLQEFVEARRTAGL+NTPPCSWSHTPP ELK +  DALSANAGFVSFV
Sbjct: 181 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSHTPPPELKGVSTDALSANAGFVSFV 240

Query: 241 IFPRHVEGPKLDRTVW 256
           IFPRHVEGPKLDRTVW
Sbjct: 241 IFPRHVEGPKLDRTVW 256


>Medtr1g045065.1 | actin-related protein 2/3 complex, protein | HC |
           chr1:16984748-16979651 | 20130731
          Length = 312

 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/256 (35%), Positives = 143/256 (55%), Gaps = 3/256 (1%)

Query: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHIXXXXXXXXX 60
           M  ++  S  L Q LL +    EK +E+DHH  EF  V YHIQ    NP +         
Sbjct: 1   MACIERSSPALKQILL-KLYRAEKSIEIDHHLYEFGSVEYHIQSQATNPLVAYLSISTPP 59

Query: 61  XXXETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120
                +     P+  IE +K     +V+I +P ++G+ LTLK+NL +IP N++     + 
Sbjct: 60  LYHGNLPNNLSPY-TIEMVKGICPNLVEIEEPAREGYQLTLKLNLDQIPRNKDYVKV-IE 117

Query: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPVVALVHRPKESFFLLPQADKVTVVYPMR 180
            +++V+ V++ + L+ IL ++ S   +  M   + LV+ P+E FF++ Q  ++  ++P+R
Sbjct: 118 DISTVQSVIISSQLKEILCNVNSDDASQGMYKPIKLVYHPREPFFVIRQQQRIIAIFPIR 177

Query: 181 FNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSFV 240
           F +  D+V+AT+F QE V+   +     TPPC+WS  PP EL     + LS N GFVSF 
Sbjct: 178 FKEKFDVVIATAFFQELVDVGNSDKWVKTPPCTWSAIPPPELTGEALEDLSTNGGFVSFD 237

Query: 241 IFPRHVEGPKLDRTVW 256
           I  RH+EG +LD+TVW
Sbjct: 238 ISSRHIEGNRLDKTVW 253


>Medtr1g045065.3 | actin-related protein 2/3 complex, protein | HC |
           chr1:16984772-16979719 | 20130731
          Length = 312

 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/256 (35%), Positives = 143/256 (55%), Gaps = 3/256 (1%)

Query: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHIXXXXXXXXX 60
           M  ++  S  L Q LL +    EK +E+DHH  EF  V YHIQ    NP +         
Sbjct: 1   MACIERSSPALKQILL-KLYRAEKSIEIDHHLYEFGSVEYHIQSQATNPLVAYLSISTPP 59

Query: 61  XXXETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120
                +     P+  IE +K     +V+I +P ++G+ LTLK+NL +IP N++     + 
Sbjct: 60  LYHGNLPNNLSPY-TIEMVKGICPNLVEIEEPAREGYQLTLKLNLDQIPRNKDYVKV-IE 117

Query: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPVVALVHRPKESFFLLPQADKVTVVYPMR 180
            +++V+ V++ + L+ IL ++ S   +  M   + LV+ P+E FF++ Q  ++  ++P+R
Sbjct: 118 DISTVQSVIISSQLKEILCNVNSDDASQGMYKPIKLVYHPREPFFVIRQQQRIIAIFPIR 177

Query: 181 FNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSFV 240
           F +  D+V+AT+F QE V+   +     TPPC+WS  PP EL     + LS N GFVSF 
Sbjct: 178 FKEKFDVVIATAFFQELVDVGNSDKWVKTPPCTWSAIPPPELTGEALEDLSTNGGFVSFD 237

Query: 241 IFPRHVEGPKLDRTVW 256
           I  RH+EG +LD+TVW
Sbjct: 238 ISSRHIEGNRLDKTVW 253


>Medtr1g045065.2 | actin-related protein 2/3 complex, protein | HC |
           chr1:16984772-16980971 | 20130731
          Length = 258

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 3/242 (1%)

Query: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHIXXXXXXXXX 60
           M  ++  S  L Q LL +    EK +E+DHH  EF  V YHIQ    NP +         
Sbjct: 1   MACIERSSPALKQILL-KLYRAEKSIEIDHHLYEFGSVEYHIQSQATNPLVAYLSISTPP 59

Query: 61  XXXETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120
                +     P+  IE +K     +V+I +P ++G+ LTLK+NL +IP N++     + 
Sbjct: 60  LYHGNLPNNLSPY-TIEMVKGICPNLVEIEEPAREGYQLTLKLNLDQIPRNKDYVKV-IE 117

Query: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPVVALVHRPKESFFLLPQADKVTVVYPMR 180
            +++V+ V++ + L+ IL ++ S   +  M   + LV+ P+E FF++ Q  ++  ++P+R
Sbjct: 118 DISTVQSVIISSQLKEILCNVNSDDASQGMYKPIKLVYHPREPFFVIRQQQRIIAIFPIR 177

Query: 181 FNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSFV 240
           F +  D+V+AT+F QE V+   +     TPPC+WS  PP EL     + LS N GFVSF 
Sbjct: 178 FKEKFDVVIATAFFQELVDVGNSDKWVKTPPCTWSAIPPPELTGEALEDLSTNGGFVSFG 237

Query: 241 IF 242
           I 
Sbjct: 238 IL 239