Miyakogusa Predicted Gene

Lj0g3v0085909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0085909.1 tr|C0Z237|C0Z237_ARATH AT3G58170 protein
OS=Arabidopsis thaliana GN=AT3G58170 PE=4 SV=1,60.53,2e-18,no
description,NULL; T_SNARE,Target SNARE coiled-coil domain; seg,NULL;
BET1-LIKE SNARE 1,NULL; GOLG,CUFF.4568.1
         (133 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g044145.1 | Bet1-like SNARE protein 1-1 | HC | chr1:165630...   199   5e-52
Medtr1g070240.1 | Bet1-like SNARE protein 1-1 | HC | chr1:309459...   120   3e-28
Medtr1g070240.2 | Bet1-like SNARE protein 1-1 | HC | chr1:309459...    88   3e-18

>Medtr1g044145.1 | Bet1-like SNARE protein 1-1 | HC |
           chr1:16563014-16568246 | 20130731
          Length = 133

 Score =  199 bits (506), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 94/107 (87%), Positives = 102/107 (95%)

Query: 27  KASSSYSHEINEQDNDKAVESLHDRVTFLKRLTGDIHEEVESHNSLLDRVGSKMDGSRGM 86
           +ASSSYS EINE DND A+++LHDRV+FLKRLTGDIHEEVESHNS+LDRVG+KMDGSRGM
Sbjct: 27  RASSSYSSEINEHDNDNAIDTLHDRVSFLKRLTGDIHEEVESHNSMLDRVGNKMDGSRGM 86

Query: 87  MLGTMDRFKKVFEKKSTRKTCSLAAYFTVAFIFIYYLIRMLGYFTLG 133
           MLGTMDRFKKVFEKKSTRKTCSL  YFT+AFIFIYYLIRMLGYFTLG
Sbjct: 87  MLGTMDRFKKVFEKKSTRKTCSLVGYFTLAFIFIYYLIRMLGYFTLG 133


>Medtr1g070240.1 | Bet1-like SNARE protein 1-1 | HC |
           chr1:30945915-30949347 | 20130731
          Length = 127

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 72/92 (78%)

Query: 34  HEINEQDNDKAVESLHDRVTFLKRLTGDIHEEVESHNSLLDRVGSKMDGSRGMMLGTMDR 93
           HEI+E DN++A++ L DRV  LKRL+GDIHEEV++HN +LD +G+ MD SRG++ GTMD+
Sbjct: 36  HEIDEHDNEQAMDGLQDRVNLLKRLSGDIHEEVDNHNRMLDHMGNDMDSSRGVLSGTMDK 95

Query: 94  FKKVFEKKSTRKTCSLAAYFTVAFIFIYYLIR 125
           FK VFE KS+R+  SL A F V F+ IYYL R
Sbjct: 96  FKMVFETKSSRRMFSLVASFVVIFLIIYYLTR 127


>Medtr1g070240.2 | Bet1-like SNARE protein 1-1 | HC |
          chr1:30945915-30949347 | 20130731
          Length = 101

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 53/64 (82%)

Query: 34 HEINEQDNDKAVESLHDRVTFLKRLTGDIHEEVESHNSLLDRVGSKMDGSRGMMLGTMDR 93
          HEI+E DN++A++ L DRV  LKRL+GDIHEEV++HN +LD +G+ MD SRG++ GTMD+
Sbjct: 36 HEIDEHDNEQAMDGLQDRVNLLKRLSGDIHEEVDNHNRMLDHMGNDMDSSRGVLSGTMDK 95

Query: 94 FKKV 97
          FK V
Sbjct: 96 FKMV 99