Miyakogusa Predicted Gene
- Lj0g3v0085639.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0085639.2 Non Characterized Hit- tr|F6HKW5|F6HKW5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,42.64,2e-17,
,CUFF.4523.2
(263 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g053255.1 | RRP12-like protein | HC | chr1:22315601-223292... 370 e-102
Medtr1g072970.1 | RRP12-like protein | HC | chr1:32408887-323960... 68 9e-12
Medtr1g072890.2 | RRP12-like protein | HC | chr1:32385057-323944... 66 4e-11
Medtr1g072890.1 | RRP12-like protein | HC | chr1:32385012-323944... 66 4e-11
>Medtr1g053255.1 | RRP12-like protein | HC | chr1:22315601-22329251
| 20130731
Length = 1138
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/263 (71%), Positives = 219/263 (83%), Gaps = 3/263 (1%)
Query: 1 MHENVSKALQILVNENKAALSPRKNELDLSAEHDSSLEFGMQPAYSKKAATRNLKSLTSC 60
MHENVS ALQILVNENKA L+P+K E + AE DSSLEF M PAYSKKAATRN+K+L S
Sbjct: 581 MHENVSTALQILVNENKAVLNPKKEETECDAEQDSSLEFSMLPAYSKKAATRNMKALESY 640
Query: 61 SNRLLYILSDIFITSLPQMRISLKGAIRCLASITDSSVTKDVLMSLFKRLQFID--HEEE 118
S++LL+ILSD+FI+S PQ RISLKGAI CLASIT+SSVTK+V +SL KR + +D E E
Sbjct: 641 SSQLLHILSDLFISSPPQTRISLKGAISCLASITNSSVTKEVFVSLLKRFELVDCEGEGE 700
Query: 119 AEKLTSNSSKLDSEPSDVKEYDQRCLMLEIASCLVEGANDNLIEIIYNLTIQSFQATNES 178
E LTSNSS LD EPSD QRC +LEI+SCLV+GANDNL+EIIYNLTI SFQATNES
Sbjct: 701 GEVLTSNSSVLDIEPSDETGCSQRCSILEISSCLVKGANDNLVEIIYNLTIHSFQATNES 760
Query: 179 VQHEAYSTLSKILEEHPCFSSPRYMELIDLLHGLKPPTAVSTLRSRFACFHKLMVQTVKI 238
V +EAY+TLSKIL+EHPC+SS +YMELIDLL +KPPT V++LR+RF CFH LM+ VKI
Sbjct: 761 VHYEAYNTLSKILKEHPCYSS-KYMELIDLLLSIKPPTDVASLRNRFVCFHTLMIHIVKI 819
Query: 239 SLEEEDNSKAFLILNEIILTLKD 261
S EE+ NSKAFLILNEIILTLKD
Sbjct: 820 SFEEDVNSKAFLILNEIILTLKD 842
>Medtr1g072970.1 | RRP12-like protein | HC | chr1:32408887-32396078
| 20130731
Length = 1294
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 132/280 (47%), Gaps = 42/280 (15%)
Query: 8 ALQILVNENKAALSPRKNELDLSAEHDSSLEFGMQPA---YSKKAATRNLKSLTSCSNRL 64
+LQ+L+ +NK N D + + DS + Q YS++ AT+NL++L +N L
Sbjct: 594 SLQLLIRQNK-------NIKDSNDKDDSRQDMDKQQVLYNYSQQVATKNLRALEISANNL 646
Query: 65 LYILSDIFITSLPQMRISLKGAIRCLASITDSSVTKDVLMSLFKRLQFIDHEEEAEKLTS 124
L LSD F+ S L+G I +ASI + K V+ +LFK+ + K T
Sbjct: 647 LKDLSDAFLKSTKDDGGCLQGTIGDIASIAE----KKVVQNLFKK-----KMSDLLKCTQ 697
Query: 125 NSSKLDSEPS--------DVKEYDQRCLMLEIASCLVEGANDNLIEIIYNLTIQSFQATN 176
N++K+D S DV + R +L+ A+ L+ G + I++++ + + Q
Sbjct: 698 NANKVDDSESSMQIDTSNDVSQSVLRARLLDFAASLLPGLDAKDIDLLFQVIKPALQDVG 757
Query: 177 ESVQHEAYSTLSKILEEHPCFSSPRYMELIDLLHGLKPPTAVSTLRSRFACFHKLMVQTV 236
+Q +AY L +L+ F S + L+ L+ + P + S R R C + L+V +
Sbjct: 758 -VMQKKAYKVLLIMLKSSDSFVSLKLEVLLGLMVEILPCHS-SAKRHRLDCLYFLIVHVL 815
Query: 237 KIS---------LEEEDNSKAF----LILNEIILTLKDVS 263
K L+ +D S A + + EIIL LK+ +
Sbjct: 816 KSEAFKDEFFYLLKSKDESMAMAWPEVFVTEIILALKEAN 855
>Medtr1g072890.2 | RRP12-like protein | HC | chr1:32385057-32394402
| 20130731
Length = 1022
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 45/286 (15%)
Query: 5 VSKALQILVNENKAALSPRKNELDLSAEHDSSLEFGMQPA---YSKKAATRNLKSLTSCS 61
+ +LQ+LV +NK N D + + D + + YS++ AT NL++L +
Sbjct: 586 ICTSLQLLVRQNK-------NIKDSNDKDDIGQDMAKEQVLVNYSQQVATENLRALEISA 638
Query: 62 NRLLYILSDIFITSLPQMRISLKGAIRCLASITDSSVTKDVLMSLFKRLQFIDHEEEAEK 121
LL LSD+F+ S L+G + +ASI + K V+ +LFK+ + K
Sbjct: 639 KNLLKDLSDVFLKSTKDDGGCLQGTVSDIASIAE----KKVVQNLFKK-----KMSDLLK 689
Query: 122 LTSNSSKLDSE--------PSDVKEYDQRCLMLEIASCLVEGANDNLIEIIYNLTIQSFQ 173
T N++++D SDV + R +L+ A L+ G + I++++ + + Q
Sbjct: 690 CTQNANRIDGSDSSMQIDASSDVSQSVLRARLLDFAVSLLPGLDTKDIDLLFQVLKPALQ 749
Query: 174 ATNESVQHEAYSTLSKILEEHPCFSSPRYMELIDLLHGLKPPTAVSTLRSRFACFHKLMV 233
+Q +AY LS IL F S + L+ L+ + P + S R R C + L++
Sbjct: 750 DVG-VMQKKAYKVLSIILRSSDSFVSSKLEVLLGLMVEILPCHS-SAKRHRLDCLYFLIL 807
Query: 234 QTVK---ISLE-----------EEDNSKAF--LILNEIILTLKDVS 263
+K + +E +D+S A+ + L EIIL LK+ +
Sbjct: 808 HVMKSEAVKVEFLYFLTVQDSKSKDDSMAWPEVFLTEIILALKEAN 853
>Medtr1g072890.1 | RRP12-like protein | HC | chr1:32385012-32394402
| 20130731
Length = 1288
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 45/283 (15%)
Query: 8 ALQILVNENKAALSPRKNELDLSAEHDSSLEFGMQPA---YSKKAATRNLKSLTSCSNRL 64
+LQ+LV +NK N D + + D + + YS++ AT NL++L + L
Sbjct: 589 SLQLLVRQNK-------NIKDSNDKDDIGQDMAKEQVLVNYSQQVATENLRALEISAKNL 641
Query: 65 LYILSDIFITSLPQMRISLKGAIRCLASITDSSVTKDVLMSLFKRLQFIDHEEEAEKLTS 124
L LSD+F+ S L+G + +ASI + K V+ +LFK+ + K T
Sbjct: 642 LKDLSDVFLKSTKDDGGCLQGTVSDIASIAE----KKVVQNLFKK-----KMSDLLKCTQ 692
Query: 125 NSSKLDSE--------PSDVKEYDQRCLMLEIASCLVEGANDNLIEIIYNLTIQSFQATN 176
N++++D SDV + R +L+ A L+ G + I++++ + + Q
Sbjct: 693 NANRIDGSDSSMQIDASSDVSQSVLRARLLDFAVSLLPGLDTKDIDLLFQVLKPALQDVG 752
Query: 177 ESVQHEAYSTLSKILEEHPCFSSPRYMELIDLLHGLKPPTAVSTLRSRFACFHKLMV--- 233
+Q +AY LS IL F S + L+ L+ + P + S R R C + L++
Sbjct: 753 -VMQKKAYKVLSIILRSSDSFVSSKLEVLLGLMVEILPCHS-SAKRHRLDCLYFLILHVM 810
Query: 234 --QTVKISL---------EEEDNSKAF--LILNEIILTLKDVS 263
+ VK+ + +D+S A+ + L EIIL LK+ +
Sbjct: 811 KSEAVKVEFLYFLTVQDSKSKDDSMAWPEVFLTEIILALKEAN 853