Miyakogusa Predicted Gene

Lj0g3v0085339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0085339.1 tr|Q2HU07|Q2HU07_MEDTR Polynucleotidyl
transferase, Ribonuclease H fold OS=Medicago truncatula
GN=Mt,41.05,5e-19,UBN2_3,NULL; seg,NULL,CUFF.4496.1
         (210 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g072160.1 | hypothetical protein | LC | chr6:28019617-2802...    57   1e-08

>Medtr6g072160.1 | hypothetical protein | LC |
          chr6:28019617-28020512 | 20130731
          Length = 166

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 42 DMLRVADLQEMISSFKQGELTVTDYFTQLRTLWDELDIFRPLPACVCAFKCT 93
          D +RV  L+  I++ KQG  +  +YF ++R+LWDEL+  RP+P C C   CT
Sbjct: 37 DRIRVFSLRSAINNLKQGIKSALEYFIKVRSLWDELNFDRPIPNCTCIHPCT 88