Miyakogusa Predicted Gene

Lj0g3v0085329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0085329.1 tr|D7KZK3|D7KZK3_ARALL NC domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,69.84,2e-19,seg,NULL; LRAT,LRAT-like domain; no
description,NULL; NC DOMAIN-CONTAINING PROTEIN,NULL; HRAS-LIKE
S,CUFF.4508.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g057650.1 | lecithin retinol acyltransferase | HC | chr1:2...   127   3e-30
Medtr5g076250.1 | lecithin retinol acyltransferase | HC | chr5:3...    98   2e-21
Medtr3g064020.1 | lecithin retinol acyltransferase | LC | chr3:2...    81   2e-16
Medtr3g063990.1 | lecithin retinol acyltransferase | LC | chr3:2...    68   2e-12
Medtr7g117750.1 | lecithin retinol acyltransferase | HC | chr7:4...    67   3e-12

>Medtr1g057650.1 | lecithin retinol acyltransferase | HC |
          chr1:25342939-25339608 | 20130731
          Length = 264

 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/62 (93%), Positives = 61/62 (98%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHFTRRGQEVGTGTVLDLLL 60
          MGLLSNR+TRESLK GDHIYSWRTAYIYAHHGIYIGDDKVIHFTRRGQEVGTGTVLD+LL
Sbjct: 1  MGLLSNRVTRESLKAGDHIYSWRTAYIYAHHGIYIGDDKVIHFTRRGQEVGTGTVLDVLL 60

Query: 61 IS 62
          +S
Sbjct: 61 LS 62


>Medtr5g076250.1 | lecithin retinol acyltransferase | HC |
          chr5:32478491-32483095 | 20130731
          Length = 254

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 50/63 (79%), Gaps = 1/63 (1%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHFTR-RGQEVGTGTVLDLL 59
          MG+ SN+I  E L PGDHIYSWR AYIYAHHGIY+GD  V+HFTR  GQE+GTGTVLD  
Sbjct: 1  MGVFSNKIDHEQLNPGDHIYSWRQAYIYAHHGIYVGDGMVLHFTRGGGQEIGTGTVLDRF 60

Query: 60 LIS 62
          L S
Sbjct: 61 LCS 63


>Medtr3g064020.1 | lecithin retinol acyltransferase | LC |
          chr3:28791368-28790464 | 20130731
          Length = 251

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHFTRRGQEVGTG--TVLDL 58
          M +LSN+I R+ LK GDHIYSWR AY+YAHHGIYIGD+ VIHFT    +  TG   +LD 
Sbjct: 1  MEVLSNKIDRKQLKTGDHIYSWRQAYVYAHHGIYIGDEMVIHFTIGSGQQATGIPAILDR 60

Query: 59 LLIS 62
             S
Sbjct: 61 FFTS 64


>Medtr3g063990.1 | lecithin retinol acyltransferase | LC |
          chr3:28784361-28783379 | 20130731
          Length = 272

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 8  ITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHFTRRG-QEVGTGTV 55
          I R+ LK GDHIYSWR AYIYAHHGIY+GD  VIHFT    Q+  T T+
Sbjct: 2  IDRKQLKAGDHIYSWRQAYIYAHHGIYVGDGMVIHFTDGAIQQTETPTI 50


>Medtr7g117750.1 | lecithin retinol acyltransferase | HC |
          chr7:48908813-48907086 | 20130731
          Length = 259

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHF 43
          MGL+SNRI +  +KPGDH+Y++R  + Y+HHGI++G  KV+HF
Sbjct: 1  MGLISNRIEKHDIKPGDHVYTYRAVFSYSHHGIFVGGSKVVHF 43