Miyakogusa Predicted Gene

Lj0g3v0084859.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0084859.2 Non Characterized Hit- tr|D8S2E4|D8S2E4_SELML
Putative uncharacterized protein OS=Selaginella
moelle,32.72,5e-19,Nucleotidyltransferase,NULL; no description,NULL;
NTP_transf_2,Nucleotidyl transferase domain; ZINC ,CUFF.4526.2
         (166 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC ...   252   1e-67
Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC ...   252   1e-67
Medtr3g097090.1 | nucleotidyltransferase family protein | HC | c...    92   2e-19
Medtr3g097090.4 | nucleotidyltransferase family protein | HC | c...    84   6e-17
Medtr8g033420.1 | nucleotidyltransferase family protein | HC | c...    69   2e-12
Medtr3g097090.2 | nucleotidyltransferase family protein | HC | c...    59   2e-09
Medtr3g097090.3 | nucleotidyltransferase family protein | HC | c...    51   5e-07
Medtr2g079330.1 | nucleotidyltransferase family protein | HC | c...    49   2e-06
Medtr2g079330.2 | nucleotidyltransferase family protein | HC | c...    49   3e-06
Medtr2g079330.3 | nucleotidyltransferase family protein | HC | c...    49   3e-06

>Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC |
           chr3:30854466-30848016 | 20130731
          Length = 479

 Score =  252 bits (643), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 141/166 (84%)

Query: 1   MSTRSMLDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNL 60
           M++ SML +VL DILR+VTP QEDW IR AIIND RS  ESVESLRGATVEP+GS VSNL
Sbjct: 1   MNSHSMLGVVLTDILRMVTPSQEDWEIRLAIINDLRSAAESVESLRGATVEPFGSVVSNL 60

Query: 61  FTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILKF 120
           FTRWGDLDISI+L NGSHI + G+ QKQ LL + +KAL++KGG++N QFI  ARVPILKF
Sbjct: 61  FTRWGDLDISIQLLNGSHIGAAGRKQKQTLLVNFLKALRMKGGYMNFQFIPKARVPILKF 120

Query: 121 KSRRQGVSCDISINNLQGVIKSKLLLSIDRIDGRFRDMVLVVKEWA 166
           KS RQG+SCD+SINNL G++KSK LL I+RIDGRF D+V+VVKEWA
Sbjct: 121 KSVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWA 166


>Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC |
           chr3:30856016-30848016 | 20130731
          Length = 479

 Score =  252 bits (643), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 141/166 (84%)

Query: 1   MSTRSMLDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNL 60
           M++ SML +VL DILR+VTP QEDW IR AIIND RS  ESVESLRGATVEP+GS VSNL
Sbjct: 1   MNSHSMLGVVLTDILRMVTPSQEDWEIRLAIINDLRSAAESVESLRGATVEPFGSVVSNL 60

Query: 61  FTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILKF 120
           FTRWGDLDISI+L NGSHI + G+ QKQ LL + +KAL++KGG++N QFI  ARVPILKF
Sbjct: 61  FTRWGDLDISIQLLNGSHIGAAGRKQKQTLLVNFLKALRMKGGYMNFQFIPKARVPILKF 120

Query: 121 KSRRQGVSCDISINNLQGVIKSKLLLSIDRIDGRFRDMVLVVKEWA 166
           KS RQG+SCD+SINNL G++KSK LL I+RIDGRF D+V+VVKEWA
Sbjct: 121 KSVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWA 166


>Medtr3g097090.1 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 580

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 3/168 (1%)

Query: 2   STRSM-LDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESV--ESLRGATVEPYGSFVS 58
           STR + LD +L D      P    +  R  +I  F  + + +   S+    VE YGSFV 
Sbjct: 40  STRIVDLDALLCDTYDRDCPKPVHYQNRRDLIRIFNMMAKEIYGNSMVSPVVEEYGSFVM 99

Query: 59  NLFTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPIL 118
           ++F    DLD+SI  S+   I+ + K Q  R     +++ +  G    L+ I  A+VPI+
Sbjct: 100 DIFNERSDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIV 159

Query: 119 KFKSRRQGVSCDISINNLQGVIKSKLLLSIDRIDGRFRDMVLVVKEWA 166
           K      GV CD+S+ N  G+ KS  + +I  IDGRF+ + L++K WA
Sbjct: 160 KVTDIGTGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLCLLMKSWA 207


>Medtr3g097090.4 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 548

 Score = 84.0 bits (206), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 2   STRSM-LDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESV--ESLRGATVEPYGSFVS 58
           STR + LD +L D      P    +  R  +I  F  + + +   S+    VE YGSFV 
Sbjct: 40  STRIVDLDALLCDTYDRDCPKPVHYQNRRDLIRIFNMMAKEIYGNSMVSPVVEEYGSFVM 99

Query: 59  NLFTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPIL 118
           ++F    DLD+SI  S+   I+ + K Q  R     +++ +  G    L+ I  A+VPI+
Sbjct: 100 DIFNERSDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIV 159

Query: 119 KFKSRRQGVSCDISINNLQGVIKSKLLLSIDRIDGRFRDMVLV 161
           K      GV CD+S+ N  G+ KS  + +I  IDGRF+ + L+
Sbjct: 160 KVTDIGTGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLCLL 202


>Medtr8g033420.1 | nucleotidyltransferase family protein | HC |
           chr8:12908258-12903936 | 20130731
          Length = 367

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 53  YGSFVSNLFTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISH 112
           YGS  S+      D+D+ + + +    + + K++    L D++++  L+    N+Q ++ 
Sbjct: 87  YGSCASSFGVSKSDIDVCLAIQD----ADVDKSKIIMKLADILQSDNLQ----NVQALTR 138

Query: 113 ARVPILKFKSRRQGVSCDISINNLQGVIKSKLLLSIDRIDGRFRDMVLVVKEWA 166
           ARVPI+K      G+SCDI INNL  V+ +KLL     ID R R +  ++K WA
Sbjct: 139 ARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYANIDPRLRQLAFIIKHWA 192


>Medtr3g097090.2 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 458

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%)

Query: 89  RLLGDLIKALKLKGGWINLQFISHARVPILKFKSRRQGVSCDISINNLQGVIKSKLLLSI 148
           R     +++ +  G    L+ I  A+VPI+K      GV CD+S+ N  G+ KS  + +I
Sbjct: 8   RKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKSHFIRAI 67

Query: 149 DRIDGRFRDMVLVVKEWA 166
             IDGRF+ + L++K WA
Sbjct: 68  SAIDGRFQKLCLLMKSWA 85


>Medtr3g097090.3 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 426

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%)

Query: 89  RLLGDLIKALKLKGGWINLQFISHARVPILKFKSRRQGVSCDISINNLQGVIKSKLLLSI 148
           R     +++ +  G    L+ I  A+VPI+K      GV CD+S+ N  G+ KS  + +I
Sbjct: 8   RKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKSHFIRAI 67

Query: 149 DRIDGRFRDMVLVV 162
             IDGRF+ + L+ 
Sbjct: 68  SAIDGRFQKLCLLT 81


>Medtr2g079330.1 | nucleotidyltransferase family protein | HC |
           chr2:33389842-33396770 | 20130731
          Length = 514

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 13  DILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNLFTRWGDLDISIE 72
           D    ++P  E+ A R A I     +++ +       VE +GSF + L+    D+D+ I 
Sbjct: 123 DFCEFLSPTPEEKAKRDAAIESVFEVIKHIWP--HCQVEVFGSFRTGLYLPTSDIDVVI- 179

Query: 73  LSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILKFKSRRQGVSCDIS 132
           L +G     IG N   R L     A K+       Q I  ARVPI+KF  R+  +S DIS
Sbjct: 180 LKSGLPKPQIGLNAISRSLSQRSMAKKI-------QVIGKARVPIIKFVERKSCLSFDIS 232

Query: 133 IN 134
            +
Sbjct: 233 FD 234


>Medtr2g079330.2 | nucleotidyltransferase family protein | HC |
           chr2:33389842-33396770 | 20130731
          Length = 361

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 13  DILRVVTPLQEDWAIRFAIINDFRSIVESVESL-RGATVEPYGSFVSNLFTRWGDLDISI 71
           D    ++P  E+ A R A I    S+ E ++ +     VE +GSF + L+    D+D+ I
Sbjct: 123 DFCEFLSPTPEEKAKRDAAIE---SVFEVIKHIWPHCQVEVFGSFRTGLYLPTSDIDVVI 179

Query: 72  ELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILKFKSRRQGVSCDI 131
            L +G     IG N   R L     A K+       Q I  ARVPI+KF  R+  +S DI
Sbjct: 180 -LKSGLPKPQIGLNAISRSLSQRSMAKKI-------QVIGKARVPIIKFVERKSCLSFDI 231

Query: 132 SIN 134
           S +
Sbjct: 232 SFD 234


>Medtr2g079330.3 | nucleotidyltransferase family protein | HC |
           chr2:33389842-33395356 | 20130731
          Length = 363

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 13  DILRVVTPLQEDWAIRFAIINDFRSIVESVESL-RGATVEPYGSFVSNLFTRWGDLDISI 71
           D    ++P  E+ A R A I    S+ E ++ +     VE +GSF + L+    D+D+ I
Sbjct: 123 DFCEFLSPTPEEKAKRDAAI---ESVFEVIKHIWPHCQVEVFGSFRTGLYLPTSDIDVVI 179

Query: 72  ELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILKFKSRRQGVSCDI 131
            L +G     IG N   R L     A K+       Q I  ARVPI+KF  R+  +S DI
Sbjct: 180 -LKSGLPKPQIGLNAISRSLSQRSMAKKI-------QVIGKARVPIIKFVERKSCLSFDI 231

Query: 132 SIN 134
           S +
Sbjct: 232 SFD 234