Miyakogusa Predicted Gene

Lj0g3v0084509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0084509.1 Non Characterized Hit- tr|I1HZK5|I1HZK5_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,38.2,0.0000004,ZF_SWIM,Zinc finger, SWIM-type; plant mutator
transposase zinc finger,Zinc finger, PMZ-type; MULE,MU,CUFF.4436.1
         (392 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g022070.1 | hypothetical protein | LC | chr6:7671087-76698...    78   2e-14

>Medtr6g022070.1 | hypothetical protein | LC | chr6:7671087-7669835
           | 20130731
          Length = 337

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 68  IREAIKLVLPRSRHRLCTQHLEKIARSNVKNPFFISDFKACMLEVLSPDDFELKWKRMVE 127
           +R AI+ V P   H LC +HL + A SN+K P F+  FK CM      ++FE +W+    
Sbjct: 1   MRNAIRTVFPNDHHHLCAKHLARNAASNIKTPQFVPKFKQCMFGDFDIEEFESRWENFFG 60

Query: 128 MYKVSENPWIQRMHRERHMWAETYLRESFSAGLQSTKICESIDEHLRNSSQNNLKLHEFL 187
            + +  N WI  ++ +R+  +  ++  +F AG ++T   E +             L +FL
Sbjct: 61  EFGLENNKWIHELYEKRNQCSTAHIWGTFYAGFRTTSRWEGLHSEFGKYVSVLSNLIDFL 120

Query: 188 NEFECVINALWHEEGKAECKS----AILQVARLSNPLKKHASDMFTWDSYKKFITE 239
           N F   +N   + E +A+  S     +LQ    S  L+  A+ ++T    +  +TE
Sbjct: 121 NHFLRWLNYERYREIEADYASFFGETVLQTQHKS--LENLAAKIYTRKLSESVVTE 174