Miyakogusa Predicted Gene

Lj0g3v0084479.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0084479.1 tr|A9TMH9|A9TMH9_PHYPA ATP-binding cassette
transporter, subfamily A, member 6, group ATH protein
Pp,49.51,3e-19,seg,NULL; ABC TRANSPORTER,NULL; ATP-BINDING CASSETTE
TRANSPORTER SUBFAMILY A (ABCA),ABC transporter ,CUFF.4437.1
         (118 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g108240.1 | ABC transporter A family protein | HC | chr4:4...   105   1e-23
Medtr4g108240.2 | ABC transporter A family protein | HC | chr4:4...   104   1e-23
Medtr4g108240.3 | ABC transporter A family protein | HC | chr4:4...    97   3e-21
Medtr4g108170.1 | ABC transporter A family protein | HC | chr4:4...    95   2e-20
Medtr4g108163.1 | ABC transporter A family protein | HC | chr4:4...    90   5e-19
Medtr3g437870.1 | ABC transporter A family protein | HC | chr3:1...    84   4e-17
Medtr4g108153.1 | ABC transporter A family protein | HC | chr4:4...    59   7e-10
Medtr4g108180.1 | ABC transporter A family protein, putative | L...    47   3e-06

>Medtr4g108240.1 | ABC transporter A family protein | HC |
          chr4:44893783-44902165 | 20130731
          Length = 934

 Score =  105 bits (261), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/91 (52%), Positives = 56/91 (61%)

Query: 6  PAPASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKC 65
          P PA+FST+ANALLRKNLTFQKRN KTNIR                   D   DKP++KC
Sbjct: 4  PVPATFSTRANALLRKNLTFQKRNKKTNIRLTLFPLIICIILVLLQNLVDNLLDKPKFKC 63

Query: 66 GCVCPNGKTNCPSSEKLCGAQYSDADQFVFC 96
          GCVC   +T C  SEK+CG +YSD  Q + C
Sbjct: 64 GCVCTTNQTTCSDSEKVCGVKYSDQTQVLAC 94


>Medtr4g108240.2 | ABC transporter A family protein | HC |
          chr4:44893783-44902139 | 20130731
          Length = 825

 Score =  104 bits (260), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/91 (52%), Positives = 56/91 (61%)

Query: 6  PAPASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKC 65
          P PA+FST+ANALLRKNLTFQKRN KTNIR                   D   DKP++KC
Sbjct: 4  PVPATFSTRANALLRKNLTFQKRNKKTNIRLTLFPLIICIILVLLQNLVDNLLDKPKFKC 63

Query: 66 GCVCPNGKTNCPSSEKLCGAQYSDADQFVFC 96
          GCVC   +T C  SEK+CG +YSD  Q + C
Sbjct: 64 GCVCTTNQTTCSDSEKVCGVKYSDQTQVLAC 94


>Medtr4g108240.3 | ABC transporter A family protein | HC |
          chr4:44893783-44900100 | 20130731
          Length = 742

 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 56/91 (61%)

Query: 6  PAPASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKC 65
          P PA+FST+ANALLRKNLTFQKRN KTNIR                   D   DKP++KC
Sbjct: 4  PVPATFSTRANALLRKNLTFQKRNKKTNIRLTLFPLIICIILVLLQNLVDNLLDKPKFKC 63

Query: 66 GCVCPNGKTNCPSSEKLCGAQYSDADQFVFC 96
          GCVC   +T C  SEK+CG +YSD  Q + C
Sbjct: 64 GCVCTTNQTTCSDSEKVCGVKYSDQTQVLAC 94


>Medtr4g108170.1 | ABC transporter A family protein | HC |
          chr4:44858044-44867506 | 20130731
          Length = 919

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 54/88 (61%)

Query: 9  ASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKCGCV 68
          +SF TQANALLRKNLTFQKRNVKTNIR                   D   D P +KCGC 
Sbjct: 5  SSFCTQANALLRKNLTFQKRNVKTNIRLILLPLILCVLLVVLQHLIDSLLDTPDFKCGCA 64

Query: 69 CPNGKTNCPSSEKLCGAQYSDADQFVFC 96
          CPN +T C  SEK+CG QYS+ +Q + C
Sbjct: 65 CPNKRTTCNDSEKVCGVQYSNQNQLLTC 92


>Medtr4g108163.1 | ABC transporter A family protein | HC |
          chr4:44844962-44852895 | 20130731
          Length = 922

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 53/91 (58%)

Query: 6  PAPASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKC 65
          P+PASF TQ NALLRKNLTFQKRNVKTNI                    + Q  +P+ KC
Sbjct: 4  PSPASFFTQTNALLRKNLTFQKRNVKTNILLILFPLILSVLLISLQSLVNHQLTQPESKC 63

Query: 66 GCVCPNGKTNCPSSEKLCGAQYSDADQFVFC 96
          GCVC +  T C  S+KLCG QYSD  Q   C
Sbjct: 64 GCVCRDNSTTCNDSDKLCGVQYSDQTQMAAC 94


>Medtr3g437870.1 | ABC transporter A family protein | HC |
          chr3:12930672-12922696 | 20130731
          Length = 939

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/89 (52%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 8  PASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKCGC 67
          PASF TQANALLRKNLTFQKRNVKTNIR                   + QFDK +YKCGC
Sbjct: 10 PASFWTQANALLRKNLTFQKRNVKTNIRLILFPFVLCILLVLIQTILNNQFDKAKYKCGC 69

Query: 68 VCPNGKTNCPSSEKLCGAQYSDADQFVFC 96
          V           E  CG QYSD DQ   C
Sbjct: 70 V-----------ENECGVQYSDFDQVGTC 87


>Medtr4g108153.1 | ABC transporter A family protein | HC |
          chr4:44832885-44841828 | 20130731
          Length = 892

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 55 DRQFDKPQYKCGCVCPNG-KTNCPSSEKLCGAQYSDADQFVFC 96
          D   DKP+YKCGC+C N  K  C  SEK+CG QYSD  Q V C
Sbjct: 15 DTLLDKPKYKCGCICANNNKIKCDDSEKVCGIQYSDQTQVVTC 57


>Medtr4g108180.1 | ABC transporter A family protein, putative | LC
          | chr4:44868632-44871058 | 20130731
          Length = 299

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 9  ASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKCGCV 68
          +SF TQ N LLRKNLTFQKRN K NIR                   D    K  +    +
Sbjct: 13 SSFWTQTNGLLRKNLTFQKRNKKANIRLILFPVILCVLLTVAQYLFDEVLPKTDF----M 68

Query: 69 CPNGKTNCPSSEKLC 83
          CP+ K  C    K+C
Sbjct: 69 CPDNKKTCNQKNKIC 83