Miyakogusa Predicted Gene

Lj0g3v0084339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0084339.1 Non Characterized Hit- tr|G7JS00|G7JS00_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,56.25,0.000002,
,CUFF.4422.1
         (121 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099580.1 | hypothetical protein | LC | chr8:42078714-4208...    46   8e-06

>Medtr8g099580.1 | hypothetical protein | LC |
           chr8:42078714-42080503 | 20130731
          Length = 309

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 65  LDCVITFCFLLFHDIKFPSKSTQQPMVDFLSKGDPAQSTSE 105
           LD  +TFCFL F +I+FP  +TQ P +D LS  + AQS S 
Sbjct: 17  LDLAVTFCFLPFQNIRFPPTNTQYPKIDCLSMDELAQSASN 57