Miyakogusa Predicted Gene

Lj0g3v0084219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0084219.1 Non Characterized Hit- tr|I1N124|I1N124_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,67.24,0.00000000000002,seg,NULL,9629_g.1
         (58 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g449880.1 | reticulon-like protein B2 | HC | chr3:17072507...    62   2e-10
Medtr5g090340.2 | reticulon-like protein B2 | HC | chr5:39343560...    47   5e-06
Medtr5g090340.1 | reticulon-like protein B2 | HC | chr5:39343560...    47   5e-06

>Medtr3g449880.1 | reticulon-like protein B2 | HC |
          chr3:17072507-17067670 | 20130731
          Length = 241

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 1  MSEKITAANLLYNLVDTFAEKGKVXXXXXXXXXXXXXXQVNKLFQRQKTVHHLLGGGK 58
          M +KITA NLL+NLVDT ++K K               ++N+LF R+K VHHLLGGGK
Sbjct: 1  MPDKITAENLLHNLVDTLSDKPKKVSFFEEDKSKSVSSEINRLFGREKPVHHLLGGGK 58


>Medtr5g090340.2 | reticulon-like protein B2 | HC |
           chr5:39343560-39339735 | 20130731
          Length = 287

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 1   MSEKITAANLLYNLVDTFAEKGKVXXXXXXXXXXXXXXQVNKLFQRQKTVHHLLGGGK 58
           MSE  TA  LL  LV+T  EK K               Q NKLF R+K VHH+LGGGK
Sbjct: 46  MSENFTAEKLLNTLVETL-EKQKSGSFHVEVKANSMTSQFNKLFGREKPVHHILGGGK 102


>Medtr5g090340.1 | reticulon-like protein B2 | HC |
           chr5:39343560-39339732 | 20130731
          Length = 290

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 1   MSEKITAANLLYNLVDTFAEKGKVXXXXXXXXXXXXXXQVNKLFQRQKTVHHLLGGGK 58
           MSE  TA  LL  LV+T  EK K               Q NKLF R+K VHH+LGGGK
Sbjct: 49  MSENFTAEKLLNTLVETL-EKQKSGSFHVEVKANSMTSQFNKLFGREKPVHHILGGGK 105