Miyakogusa Predicted Gene

Lj0g3v0083899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0083899.1 tr|A9TB49|A9TB49_PHYPA Histone transcription
regulator HIRA OS=Physcomitrella patens subsp. patens
G,51.14,0.000000000000003, ,CUFF.4400.1
         (88 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g053675.1 | histone transcription regulator HIRA protein |...   119   7e-28
Medtr2g086140.1 | histone transcription regulator HIRA protein |...   113   5e-26

>Medtr4g053675.1 | histone transcription regulator HIRA protein | HC
           | chr4:19445007-19455001 | 20130731
          Length = 1031

 Score =  119 bits (298), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/73 (73%), Positives = 63/73 (86%)

Query: 12  VKFNHSMFRRNISNAQEVKSVQLGGPIGTSKTGRKELQPYNIIAIGSQDRTITLWTTSSP 71
           VKFNHSMF++++S  +EVKSV  G   G SKTG KE QPYN+IAIGSQDRTIT+WTT+SP
Sbjct: 271 VKFNHSMFKKHLSTTEEVKSVPAGWSNGASKTGNKEPQPYNVIAIGSQDRTITVWTTASP 330

Query: 72  RPLFVAKHFFTQA 84
           RPLFVAKHFFTQ+
Sbjct: 331 RPLFVAKHFFTQS 343


>Medtr2g086140.1 | histone transcription regulator HIRA protein | HC
           | chr2:36226276-36219828 | 20130731
          Length = 992

 Score =  113 bits (282), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/73 (72%), Positives = 61/73 (83%)

Query: 12  VKFNHSMFRRNISNAQEVKSVQLGGPIGTSKTGRKELQPYNIIAIGSQDRTITLWTTSSP 71
           V+FNH +F++N SN QE KS  +G   G SKTG KE QPYNIIAIGSQDRTIT+WTT+SP
Sbjct: 267 VRFNHFLFKKNSSNTQEGKSEPVGWSNGGSKTGPKEPQPYNIIAIGSQDRTITVWTTASP 326

Query: 72  RPLFVAKHFFTQA 84
           RPLFVAKHFFTQ+
Sbjct: 327 RPLFVAKHFFTQS 339