Miyakogusa Predicted Gene

Lj0g3v0083669.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0083669.1 Non Characterized Hit- tr|G7IGQ6|G7IGQ6_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,26.24,0.0000000002,RNA-binding domain, RBD,NULL; seg,NULL;
no description,Nucleotide-binding, alpha-beta plait;
RRM_1,R,CUFF.4384.1
         (327 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g060030.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    72   7e-13
Medtr8g045280.1 | DUF4283 domain protein | LC | chr8:17686445-17...    61   1e-09
Medtr0073s0040.1 | DUF4283 domain protein | LC | scaffold0073:22...    60   3e-09
Medtr5g073130.1 | DUF4283 domain protein | LC | chr5:31119102-31...    59   5e-09
Medtr5g048260.1 | DUF4283 domain protein | LC | chr5:21111986-21...    59   7e-09
Medtr1148s0010.1 | DUF4283 domain protein | LC | scaffold1148:29...    57   2e-08
Medtr6g048830.1 | DUF4283 domain protein | LC | chr6:17708420-17...    56   5e-08
Medtr7g083690.1 | endonuclease/exonuclease/phosphatase family pr...    55   1e-07
Medtr5g053650.1 | DUF4283 domain protein | LC | chr5:22104331-22...    52   6e-07
Medtr4g061490.1 | DUF4283 domain protein | LC | chr4:22746210-22...    52   1e-06
Medtr7g108760.1 | DUF4283 domain protein | LC | chr7:44356978-44...    51   1e-06
Medtr8g058470.1 | DUF4283 domain protein | LC | chr8:20135093-20...    51   1e-06
Medtr3g048390.1 | DUF4283 domain protein | LC | chr3:17919204-17...    50   2e-06
Medtr5g054740.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    49   6e-06

>Medtr2g060030.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr2:24731568-24734132 | 20130731
          Length = 768

 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%)

Query: 159 TQINNSNSMLSKLAVAVLKDLERSSIIQRQLEGKGFRGVQVRPFGAKEKISSFQNEEDCK 218
           T +       S+  +A + D E   ++QR++   GF  + + P GA + +   ++E D  
Sbjct: 327 TVVVEEKQQASRCMIATVLDGEAIPVLQRRIYDAGFENLDIIPMGADKVLLKTEDESDVN 386

Query: 219 LLLQQIAGELGDMFESLEPMDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVC 278
           ++L + A      F ++       V      W++++ VP+  WN +FF     + G  + 
Sbjct: 387 VILSEAASFFASFFTNIVKWKKEVVFREKGAWVRIYGVPLQAWNLEFFKLCVYDCGRLLK 446

Query: 279 MDDPTCKEERFDYARILLLSS 299
           +DD T  + RFDYAR+L+ +S
Sbjct: 447 VDDYTVDKLRFDYARVLISTS 467


>Medtr8g045280.1 | DUF4283 domain protein | LC |
           chr8:17686445-17683874 | 20130731
          Length = 804

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%)

Query: 184 IIQRQLEGKGFRGVQVRPFGAKEKISSFQNEEDCKLLLQQIAGELGDMFESLEPMDPLKV 243
           ++Q ++E  GF+ + V P GA        ++ +   ++         +F ++   +   V
Sbjct: 393 VVQTRIEDAGFKDLDVIPLGADRVFMRSASDVEVSTIIAGARDFFDHIFLNIVRWEKQSV 452

Query: 244 PTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDYARILLLSS 299
           P     W++L+ +P+  WN +FF       G ++  D  + ++ERFDYARIL+ +S
Sbjct: 453 PFQRGAWLRLYGIPLHAWNENFFKLCVFECGRFLRSDGCSMEKERFDYARILIATS 508


>Medtr0073s0040.1 | DUF4283 domain protein | LC |
           scaffold0073:22485-21368 | 20130731
          Length = 344

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 143 EESRNKKIRKEWRKKETQINNSNSMLSKLAVAVLKDLERSSIIQRQLEGKGFRGVQVRPF 202
           E +R  K  KE+  K T  ++     S+  +A + + E   ++QR++   GF  + +   
Sbjct: 40  EVARVVKDGKEFIPKYTSKDHDVLWASRGMIATVHNGEAIPVLQRRIYDAGFEHLDIITL 99

Query: 203 GAKEKISSFQNEEDCKLLLQQIAGELGDMFESLEPMDPLKVPTGYLV-----WIKLWKVP 257
           GA + +    ++ D   LL     E  D F++     P+K     +V     W++++ VP
Sbjct: 100 GADKVLLRTDDDSDVLFLLS----EASDFFDTF-FTKPVKWKKDMVVRERGAWVRIFGVP 154

Query: 258 IGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDYARILLLSS 299
           +   N +FF     + G  + +DDPT ++  FDYAR+L+ +S
Sbjct: 155 LQACNPEFFKLCVYDCGRMLKVDDPTLEKIHFDYARVLVSTS 196


>Medtr5g073130.1 | DUF4283 domain protein | LC |
           chr5:31119102-31120734 | 20130731
          Length = 401

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 150 IRKEWRKKETQINNSNSMLSKLAVAVLKDLERSSIIQRQLEGKGFRGVQVRPFGAKEKIS 209
           +  E RK E +I N    +S +   + +D     ++QR++   GF  +++ P G  +   
Sbjct: 143 VEGEKRKHEGEIFNEAEKISLVETVLNRD--SIPLLQRRIFDAGFNTLEIIPLGDDKVFL 200

Query: 210 SFQNEEDCKLLLQQIAGELGDMFESLEPMDPLKVPTGYL-----VWIKLWKVPIGFWNSD 264
              ++ +   LL Q+A    + F S     P++   G +      W++++  P+  WN  
Sbjct: 201 RTTDDGEVSFLLSQVAKFFNNFFTS-----PVRWNKGIVNRERGAWVRIYGTPLYAWNIK 255

Query: 265 FFTKVTSNIGSYVCMDDPTCKEERFDYARILLLSSEPGNTLRMMN 309
           FF     + G  +  D+ T +++R DYAR+L+ +S    TL ++N
Sbjct: 256 FFKLCVLDSGRLLQADEFTFEKQRLDYARVLVATS----TLEVIN 296


>Medtr5g048260.1 | DUF4283 domain protein | LC |
           chr5:21111986-21110836 | 20130731
          Length = 235

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%)

Query: 173 VAVLKDLERSSIIQRQLEGKGFRGVQVRPFGAKEKISSFQNEEDCKLLLQQIAGELGDMF 232
           V+++ + E S  IQ++++  GF  V V   G         N ED   +        G +F
Sbjct: 116 VSLVLEGESSLAIQQKVDDAGFPNVVVTQLGGDRVFIHCNNGEDTWKVFDDAVHFFGMLF 175

Query: 233 ESLEPMDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDYA 292
            ++    P +V      W++++ VPI  W  DFF     + G ++ +DD T  + R DYA
Sbjct: 176 TTVRKWMPSEVKYERGAWLRIYGVPIHAWTEDFFRLCVLDTGRFLHIDDCTVDKARLDYA 235


>Medtr1148s0010.1 | DUF4283 domain protein | LC |
           scaffold1148:292-2316 | 20130731
          Length = 604

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 63/125 (50%)

Query: 172 AVAVLKDLERSSIIQRQLEGKGFRGVQVRPFGAKEKISSFQNEEDCKLLLQQIAGELGDM 231
           A+A + + E  +++Q ++E  GF  + + P  A       +++++   +L +        
Sbjct: 150 ALANVVNGEAITVVQNRVEDAGFADLDIIPLVADRVFLRSKSDKETFTMLGEAKYFFDHF 209

Query: 232 FESLEPMDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDY 291
           F+++   +   VP+    W++L+ +P+  WN + F       GS++  DD +  + RFDY
Sbjct: 210 FKNIVRWEKAVVPSRRGAWLRLYGIPLHAWNENLFKLCVMECGSFLHTDDMSLDKGRFDY 269

Query: 292 ARILL 296
           A +L+
Sbjct: 270 ASVLI 274


>Medtr6g048830.1 | DUF4283 domain protein | LC |
           chr6:17708420-17709673 | 20130731
          Length = 286

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 180 ERSSIIQRQLEGKGFRGVQVRPFGA-KEKISSFQNEEDCKLLLQQIAGELGDMFESLEPM 238
           E   +I+ ++   GF  + + P GA K  I  F N +     + Q+     D F      
Sbjct: 58  EAIPVIRTRITDAGFDDLDIIPLGADKVYIRCFSNTD-----VMQVIDTARDFFNLFFSH 112

Query: 239 ------DPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDYA 292
                 D +K   G  VW++++ + I  WNS FF     + G ++ +D+ T  ++RFD+A
Sbjct: 113 IVRWNKDIVKFERG--VWVRIYGILIHAWNSSFFKLAVLDCGRFLRLDNCTVAKDRFDHA 170

Query: 293 RILLLSS 299
           RILL  S
Sbjct: 171 RILLAMS 177


>Medtr7g083690.1 | endonuclease/exonuclease/phosphatase family
           protein | LC | chr7:32221247-32217435 | 20130731
          Length = 1124

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 1/128 (0%)

Query: 173 VAVLKDLERSSIIQRQLEGKGFRGVQVRPFGAKEKISSFQNEEDCKLLLQQIAGELGDMF 232
           VA +   + S  +Q+++E  GF  V V P G+          ED   +   +    G +F
Sbjct: 187 VASVVSGDSSLSLQQRVEDAGFSNVVVTPMGSDRVFLYCTGGEDIWTVFNDVVHFFGMLF 246

Query: 233 ESLEPMDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKE-ERFDY 291
             L       +      WI ++ +P+  WN DF+    S  G ++  DD T  +  R D+
Sbjct: 247 SDLHRWSSEDIIYERGDWIIIYGIPVHAWNEDFYKICVSGSGRFIRSDDCTAVDRARLDF 306

Query: 292 ARILLLSS 299
           AR+L+ ++
Sbjct: 307 ARVLISTT 314


>Medtr5g053650.1 | DUF4283 domain protein | LC |
           chr5:22104331-22105538 | 20130731
          Length = 385

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 169 SKLAVAVLKDLERSSIIQRQLEGKGFRGVQVRPFGAKEKISSFQNEEDCKLLLQQIAGEL 228
           SK  +A LK+     I+Q+     GF   ++   G    +     E D   L +  A  +
Sbjct: 11  SKSILARLKNDFCLYIVQQAFVDVGFVDFKLISLGEDNVVLHPGVEGDAMELFKAAADFI 70

Query: 229 GDMFESLEP--MDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKE 286
           G+  +   P  +D + V      W++ + VP+  WN  FF ++ +  G  + +DD T  +
Sbjct: 71  GNFLDDCRPWMLDSI-VNYERGAWVRCYGVPLHVWNDIFFLELAATQGRLLKIDDCTTNK 129

Query: 287 ERFDYARILLLSSEPGNTLRMMNKRWV 313
           +R DYA  LL+S+     + ++ K W+
Sbjct: 130 DRLDYA-CLLISTPSLKEINVIEKVWI 155


>Medtr4g061490.1 | DUF4283 domain protein | LC |
           chr4:22746210-22743819 | 20130731
          Length = 639

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 191 GKGFRGVQVRPFGAKEKISSFQNEEDCKLLLQQIAGELGDMFESLEP--MDPLKVPTGYL 248
           G G   V V P G+         + D   +  +       MF  +    +D  K   G  
Sbjct: 304 GCGINNVVVAPMGSDRVFLYCMGDVDIWNVFNEAVDFFSMMFSDIHKWVLDDEKYERG-- 361

Query: 249 VWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDYARILL 296
            WI+++  P   WN  FF    S  G Y+  DD T    R DYAR+L+
Sbjct: 362 AWIRIYGTPAHAWNESFFKICASGCGRYIRSDDCTVDRARLDYARVLI 409


>Medtr7g108760.1 | DUF4283 domain protein | LC |
           chr7:44356978-44354950 | 20130731
          Length = 569

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 250 WIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDYARILLL 297
           W++++ VPI  WN DFF    + +G ++ +D+ T    R DYARIL+L
Sbjct: 81  WLRVYGVPIHAWNDDFFRMCVNRVGRFIHLDECTADRARLDYARILIL 128


>Medtr8g058470.1 | DUF4283 domain protein | LC |
           chr8:20135093-20137121 | 20130731
          Length = 567

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 250 WIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDYARILLL 297
           W++++ VPI  WN DFF    + +G ++ +D+ T    R DYARIL+L
Sbjct: 81  WLRVYGVPIHAWNDDFFRMCVNRVGRFIHLDECTADRARLDYARILIL 128


>Medtr3g048390.1 | DUF4283 domain protein | LC |
           chr3:17919204-17917831 | 20130731
          Length = 457

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 4/142 (2%)

Query: 169 SKLAVAVLKDLERSSIIQRQLEGKGFRGVQVRPFGAKEKISSFQNEEDCKLLLQQIAGEL 228
           SK A+A + + +   I+Q+++   GF  V+V P G    I     +ED   +    A   
Sbjct: 186 SKGALATVLNGDFIPIVQQKIIDVGFENVRVVPRGGDNVILFCSGKEDMMSVYLAAADFF 245

Query: 229 GDMFESLEP--MDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKE 286
              F  +    +    VP    VW++++ VP+  W+  F   ++S+ G  + +D  T   
Sbjct: 246 NCFFTDMRAWSLTEDNVPERG-VWLRIYGVPLHVWHIKFLEFISSSCGRMLKIDPCTTNL 304

Query: 287 ERFDYARILLLSSEPGNTLRMM 308
           ER D+ARI L+S+E  +T+  +
Sbjct: 305 ERLDFARI-LVSTECLDTINAV 325


>Medtr5g054740.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr5:22555269-22559169 | 20130731
          Length = 878

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 250 WIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDYARILLLSS 299
           W++++ VP+  WNS  F     + G  + MD+ T ++ERFDYAR+L+ +S
Sbjct: 500 WVRIYGVPLHAWNSKKFKLCVFDCGRLLRMDEVTVEKERFDYARVLIATS 549