Miyakogusa Predicted Gene

Lj0g3v0083589.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0083589.2 Non Characterized Hit- tr|I1MNS0|I1MNS0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15324
PE,84.94,0,TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN,NULL; TATD
FAMILY DEOXYRIBONUCLEASE,TatD family; TatD_,CUFF.4379.2
         (312 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g033025.1 | TatD-related deoxyribonuclease | HC | chr6:103...   490   e-139

>Medtr6g033025.1 | TatD-related deoxyribonuclease | HC |
           chr6:10349371-10356081 | 20130731
          Length = 312

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/312 (76%), Positives = 255/312 (81%)

Query: 1   MMKLFDAHCHLQDPRILSKAHQLIKTAQDKGVARFAVNGVCEQDWHLVKNLAETYPCVIP 60
           MMKLFDAHCHLQDPRI++K  +LIKTAQD GV  FAVNGV EQDW  VK L+ TYP V+P
Sbjct: 1   MMKLFDAHCHLQDPRIINKTPELIKTAQDSGVLHFAVNGVSEQDWFSVKQLSVTYPSVLP 60

Query: 61  CFGLHPWYVAERSPDWFKTLKDYFDSTPSAAVGEIGVDKGSQGRKIDFSEQVEVLTQQLE 120
            FGLHPWYVAERSP+W KTLK+YFDSTPSAAVGEIG+DKGSQG+KIDFS+QVEVL +QLE
Sbjct: 61  SFGLHPWYVAERSPNWLKTLKEYFDSTPSAAVGEIGLDKGSQGKKIDFSQQVEVLRKQLE 120

Query: 121 LAKELNKPASIHCVRAFGDLLELMKSVGPFPAGVILHSYLGSAEMVPEFSKLGAYFSFSG 180
           LAKELNKPAS+HCVRA+GDLLELMKSVGPFPAGV+LHSYLGSAEMVPEFSKLGAYFSFSG
Sbjct: 121 LAKELNKPASVHCVRAYGDLLELMKSVGPFPAGVVLHSYLGSAEMVPEFSKLGAYFSFSG 180

Query: 181 FXXXXXXXXXXXXXXXVPSDRILLETDAPDALPKSNIDSLLFVEGDASLSEEFQAQRXXX 240
           F               V SDR+LLETDAPDALPKSNIDSL FVEGD SL  E   Q    
Sbjct: 181 FLMSLKANKAKKMLKMVSSDRMLLETDAPDALPKSNIDSLFFVEGDTSLDNEVHGQTSTS 240

Query: 241 XXXXXXXXXXXXHVLKDVSMLPKETLNHPANIRNVLDYVASMLEITKEELAELSYQNAVR 300
                        VL D SMLPK+TLNHPANI NVLDYVASMLEITKEELAELSYQNAVR
Sbjct: 241 SSTSDSSAANPSQVLTDASMLPKDTLNHPANIHNVLDYVASMLEITKEELAELSYQNAVR 300

Query: 301 LFSYEGSKILQK 312
           LFSYEGSK+LQK
Sbjct: 301 LFSYEGSKLLQK 312