Miyakogusa Predicted Gene

Lj0g3v0083479.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0083479.2 Non Characterized Hit- tr|I1N107|I1N107_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53828 PE,51.67,3e-19,
,CUFF.4371.2
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g090900.1 | hypothetical protein | HC | chr5:39593976-3959...   142   7e-35
Medtr3g450760.1 | hypothetical protein | HC | chr3:17554283-1755...    62   1e-10

>Medtr5g090900.1 | hypothetical protein | HC |
           chr5:39593976-39597804 | 20130731
          Length = 473

 Score =  142 bits (358), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 88/123 (71%), Gaps = 12/123 (9%)

Query: 1   MQGSWEGSLLT----EKKAASVTPWPGTETERKNKSVRFECVSS--------DDGDVKKI 48
           ++GSW  S+ T     K  ASVTPWP  +T+++NKSVRF+C           DD  +KK 
Sbjct: 189 VEGSWTRSIHTAYKTRKNEASVTPWPAADTQKQNKSVRFKCECDLVSYQSPPDDWHMKKN 248

Query: 49  KSPNNQSACKPSPYPTPLKLFDEMQTPGTVYPASLEKSRDCKHRVRSQFVYSNDNPSENV 108
           KSP++QSACK SPYPTPLKLFD+MQTPGTVYP SLE   D KHRVRSQF+Y N NP +N+
Sbjct: 249 KSPDSQSACKQSPYPTPLKLFDDMQTPGTVYPTSLEDLYDGKHRVRSQFIYPNCNPGQNI 308

Query: 109 FLS 111
           FLS
Sbjct: 309 FLS 311


>Medtr3g450760.1 | hypothetical protein | HC |
           chr3:17554283-17559172 | 20130731
          Length = 439

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 19/96 (19%)

Query: 16  ASVTPWPGTETERKNKSVRFECVSSDDGDVKKIKSPNN---QSACKPSPYPTPLKLFDEM 72
            S  P  GTE + +NKSVRFEC    D D+   +S       +    SP PTP+K+ +EM
Sbjct: 183 GSYHPIDGTENKGRNKSVRFEC----DNDISSCESSAYGGWHTKKTESPNPTPMKISNEM 238

Query: 73  QTPGTVYPASLEKSRDCKHRVRSQFVYSNDNPSENV 108
           QTPGTVYPA            +SQFVY N +  E+V
Sbjct: 239 QTPGTVYPA------------KSQFVYPNISLGEDV 262