Miyakogusa Predicted Gene

Lj0g3v0082949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0082949.1 CUFF.4391.1
         (356 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g075340.1 | hypothetical protein | HC | chr2:31499138-3149...   615   e-176

>Medtr2g075340.1 | hypothetical protein | HC |
           chr2:31499138-31491297 | 20130731
          Length = 464

 Score =  615 bits (1586), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/352 (84%), Positives = 324/352 (92%), Gaps = 6/352 (1%)

Query: 5   GGDNLKSRMRSGVVVHEDLGLGSLSEKLRSHGFSETVTVSGGGTVDAELGGFNLGSAGHL 64
           GG   + R   GV ++EDLGLG LSE+L++HGFSE+V+    G+VD E+GG NLGSAG+L
Sbjct: 119 GGKGRERRGLVGVGLNEDLGLGLLSERLKNHGFSESVS----GSVDEEIGGLNLGSAGYL 174

Query: 65  GRRQGIINFTSTYDSRTQEVEGSVAARGDLWRVEASHGGSASTSGNENSSLFLVQLGPLL 124
           GRRQG+INFTSTYDSRTQEVEGS+A RGDLWRVEAS GGS  TSGNENSSLFLVQLGPLL
Sbjct: 175 GRRQGVINFTSTYDSRTQEVEGSIATRGDLWRVEASRGGS--TSGNENSSLFLVQLGPLL 232

Query: 125 FIRDSTLLLPVHLSKQHLLWYGYDRKNGMHSLCPAVWSKHRRWLLMSMLCLNPLACSFVD 184
           FIRDSTLLLPVHLSKQHLLWYGYDRKNGMHSLCPAVWSKHRRWLLMSMLCLNP+ACSFVD
Sbjct: 233 FIRDSTLLLPVHLSKQHLLWYGYDRKNGMHSLCPAVWSKHRRWLLMSMLCLNPVACSFVD 292

Query: 185 LQFPNGQLTYVSGEGLTTSAFLPVCGGLLQAQGQYPGEMKFSFSCKNKWGTRITPMVQWP 244
           LQFPNGQLTYVSGEGL+TSAFLP+CGGLLQ QGQYPGEM+FS+SCKNKWGTRITPM+QWP
Sbjct: 293 LQFPNGQLTYVSGEGLSTSAFLPICGGLLQVQGQYPGEMRFSYSCKNKWGTRITPMIQWP 352

Query: 245 DKSFSLGLAQALAWKRSGLIVRPTIQFSVCPTLGGSNPGLRAELIHSVKEKLSLICGCAF 304
           DKSFS G+ QALAWKRSGLIVRPT+QFSVCPT GGSNPGLRAELIHS+KE+L+LICGC+ 
Sbjct: 353 DKSFSFGVCQALAWKRSGLIVRPTVQFSVCPTFGGSNPGLRAELIHSIKEQLNLICGCSM 412

Query: 305 MTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSFSIQINSGIEF 356
            TYPSAFASVSIG+SKWNGNVG  GLVLRVD PLC+VGRPSFS+QINSGIEF
Sbjct: 413 TTYPSAFASVSIGRSKWNGNVGKSGLVLRVDTPLCSVGRPSFSVQINSGIEF 464