Miyakogusa Predicted Gene

Lj0g3v0081449.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0081449.1 tr|G7LHQ3|G7LHQ3_MEDTR Ubiquitin
carboxyl-terminal hydrolase OS=Medicago truncatula GN=MTR_8g067060
,52.63,0.001, ,CUFF.4222.1
         (39 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g471100.1 | ubiquitin carboxyl-terminal hydrolase | LC | c...    50   7e-07
Medtr8g067060.1 | ubiquitin carboxyl-terminal hydrolase | LC | c...    49   8e-07
Medtr6g022310.1 | ubiquitin carboxyl-terminal hydrolase-like pro...    49   1e-06
Medtr8g064910.1 | ubiquitin carboxyl-terminal hydrolase | LC | c...    49   1e-06

>Medtr8g471100.1 | ubiquitin carboxyl-terminal hydrolase | LC |
           chr8:28044025-28040669 | 20130731
          Length = 572

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 24/39 (61%)

Query: 1   MGSILQCLTHTINLFQGLRSYTHDCQDDAGDFCVFCALR 39
           M +ILQC THT+ +F GLR  TH    D   FCV CA R
Sbjct: 223 MSAILQCFTHTVQMFLGLRYCTHASSCDVEGFCVICAFR 261


>Medtr8g067060.1 | ubiquitin carboxyl-terminal hydrolase | LC |
           chr8:27986696-27983367 | 20130731
          Length = 563

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 24/39 (61%)

Query: 1   MGSILQCLTHTINLFQGLRSYTHDCQDDAGDFCVFCALR 39
           M +ILQC THT+ +F GLR  TH    D   FCV CA R
Sbjct: 214 MSAILQCFTHTVQMFLGLRYCTHASSCDVEGFCVICAFR 252


>Medtr6g022310.1 | ubiquitin carboxyl-terminal hydrolase-like
           protein | HC | chr6:7777502-7779490 | 20130731
          Length = 662

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 1   MGSILQCLTHTINLFQGLRSYTHDCQDDAGDFCVFCALR 39
           + SI+QC THT+ L +GL S +H C D    +CV CA R
Sbjct: 138 LNSIMQCFTHTVPLVEGLFSCSHACNDGHNGYCVICAFR 176


>Medtr8g064910.1 | ubiquitin carboxyl-terminal hydrolase | LC |
           chr8:27241109-27237761 | 20130731
          Length = 419

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 1   MGSILQCLTHTINLFQGLRSYTHDCQDDAGDFCVFCALR 39
           + +ILQC THT+ +F+GLRS TH    D   FC  CA R
Sbjct: 65  LSAILQCFTHTVPMFRGLRSCTHASPCDVKSFCFICAFR 103