Miyakogusa Predicted Gene

Lj0g3v0081419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0081419.1 Non Characterized Hit- tr|B9REU3|B9REU3_RICCO
Pre-rRNA-processing protein TSR2, putative OS=Ricinus
,48.03,3e-19,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
seg,NULL,CUFF.4227.1
         (126 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g043450.1 | Pre-rRNA-processing protein TSR2, motif protei...   118   2e-27
Medtr1g035200.1 | Pre-rRNA-processing protein TSR2, motif protei...    59   1e-09
Medtr8g043410.1 | Pre-rRNA-processing protein TSR2, motif protei...    52   1e-07
Medtr7g085465.1 | hypothetical protein | LC | chr7:33111552-3311...    50   6e-07
Medtr7g109770.1 | hypothetical protein | LC | chr7:44945332-4494...    48   2e-06

>Medtr8g043450.1 | Pre-rRNA-processing protein TSR2, motif protein |
           HC | chr8:16680605-16677438 | 20130731
          Length = 206

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 86/129 (66%), Gaps = 8/129 (6%)

Query: 2   LSLNVEVEDGSVEEVAENLMVMHEECLEGNFRSIEILKEANLKQAAHPRVTQIVXXXXXX 61
           +S+N+ +EDGS EEVAE+LM+M+ ECLEGNF S+E L+EA+   AA+  V +IV      
Sbjct: 80  VSVNIVIEDGSDEEVAEDLMIMYGECLEGNFSSVERLREASRNPAAYSGVQKIVNGNGDE 139

Query: 62  XXXXXXXXXIIGASNSSNMDVDIPKSESDMNSVNRPVNGTLP-----KVAAEADDEWTVV 116
                     I   NS+NMDVDIPKSES++NS+N+ VNG+ P       + E DD W+VV
Sbjct: 140 DDDSDEN---IEDDNSANMDVDIPKSESNLNSMNKTVNGSQPDNPGEDNSGEGDDGWSVV 196

Query: 117 SNRRNKGRK 125
           S R+NKGRK
Sbjct: 197 SRRKNKGRK 205


>Medtr1g035200.1 | Pre-rRNA-processing protein TSR2, motif protein |
           LC | chr1:12606155-12608730 | 20130731
          Length = 261

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query: 9   EDGSVEEVAENLMVMHEECLEGNFRSIEILKEANLKQAAHPRVTQIV 55
           ++GSVEEVA+ LM M+EECL GNF S+E L+EA+  Q AHP V ++V
Sbjct: 172 QEGSVEEVAKLLMKMYEECLVGNFMSVERLREASRNQVAHPPVGKVV 218


>Medtr8g043410.1 | Pre-rRNA-processing protein TSR2, motif protein |
           LC | chr8:16666385-16665394 | 20130731
          Length = 132

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 1   MLSLNVEVEDGSVEEVAENLMVMHEECLEGNFRSIEILKEANLKQAAHPRVTQI 54
           ++  N+++ DGS E +A  LMV HE+CL GNF +IE  +EAN     +P + ++
Sbjct: 78  LVDFNLQIADGSDEHIAVELMVTHEDCLNGNFMTIEFPREANRNPNFYPSMEEV 131


>Medtr7g085465.1 | hypothetical protein | LC |
           chr7:33111552-33113945 | 20130731
          Length = 132

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 29/33 (87%)

Query: 10  DGSVEEVAENLMVMHEECLEGNFRSIEILKEAN 42
           D S+EEV E L+VM+EECL+G+F S++IL+EA+
Sbjct: 82  DNSIEEVCEQLLVMYEECLQGDFSSVKILREAS 114


>Medtr7g109770.1 | hypothetical protein | LC |
           chr7:44945332-44946260 | 20130731
          Length = 289

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 30/37 (81%), Gaps = 1/37 (2%)

Query: 10  DGSV-EEVAENLMVMHEECLEGNFRSIEILKEANLKQ 45
           D S+ +EVA  LM+MH+ECL+GNF S+EIL+E +L Q
Sbjct: 135 DASITKEVATKLMLMHKECLQGNFSSVEILREESLNQ 171