Miyakogusa Predicted Gene

Lj0g3v0081359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0081359.1 Non Characterized Hit- tr|Q9LHP2|Q9LHP2_ARATH
Putative serine/arginine-rich protein OS=Arabidopsis
t,60.31,2e-18,seg,NULL; SERINE/ARGININE RICH SPLICING
FACTOR,NULL,CUFF.4434.1
         (149 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083550.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    57   6e-09
Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    55   2e-08

>Medtr3g083550.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:37716900-37714302 | 20130731
          Length = 248

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 26/26 (100%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDGQ+LLGRE+TVVFAEENRKKPTEM
Sbjct: 102 MDGQVLLGREITVVFAEENRKKPTEM 127


>Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:23814162-23811233 | 20130731
          Length = 220

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 25/26 (96%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDGQ+LLGRELTVVFAEENRKKP EM
Sbjct: 104 MDGQVLLGRELTVVFAEENRKKPQEM 129