Miyakogusa Predicted Gene

Lj0g3v0080839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080839.1 Non Characterized Hit- tr|I3T2G7|I3T2G7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.14,0,Alpha-L
RNA-binding motif,NULL; 40S RIBOSOMAL PROTEIN S9,NULL; 30S 40S
RIBOSOMAL PROTEIN,Ribosomal p,CUFF.4190.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g067490.1 | 40S ribosomal S9-like protein | HC | chr7:2465...   191   1e-49
Medtr4g021290.1 | 40S ribosomal S9-like protein | HC | chr4:6900...   191   1e-49
Medtr3g005450.1 | 40S ribosomal S9-like protein | HC | chr3:2083...   191   1e-49
Medtr3g005430.1 | 40S ribosomal S9-like protein | HC | chr3:2007...   191   1e-49
Medtr1g068965.1 | 40S ribosomal S9-like protein | HC | chr1:2951...   190   2e-49
Medtr4g108305.1 | 40S ribosomal protein S9, putative | LC | chr4...    78   2e-15
Medtr4g108310.1 | 40S ribosomal protein S9, putative | HC | chr4...    64   4e-11
Medtr0002s0590.1 | 30S ribosomal protein S4, putative | LC | sca...    46   6e-06

>Medtr7g067490.1 | 40S ribosomal S9-like protein | HC |
           chr7:24652242-24653030 | 20130731
          Length = 197

 Score =  191 bits (486), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 95/97 (97%)

Query: 1   MFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 60
           MF++GLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ
Sbjct: 82  MFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 141

Query: 61  VVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKN 97
           VVNIPSFMVRVDSQKHIDFSLTSP GGG PGRVKRKN
Sbjct: 142 VVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 178


>Medtr4g021290.1 | 40S ribosomal S9-like protein | HC |
           chr4:6900307-6902241 | 20130731
          Length = 197

 Score =  191 bits (485), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 95/97 (97%)

Query: 1   MFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 60
           MF++GLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ
Sbjct: 82  MFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 141

Query: 61  VVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKN 97
           VVNIPSFMVRVDSQKHIDFSLTSP GGG PGRVKRKN
Sbjct: 142 VVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 178


>Medtr3g005450.1 | 40S ribosomal S9-like protein | HC |
           chr3:208355-206191 | 20130731
          Length = 197

 Score =  191 bits (485), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 95/97 (97%)

Query: 1   MFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 60
           MF++GLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ
Sbjct: 82  MFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 141

Query: 61  VVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKN 97
           VVNIPSFMVRVDSQKHIDFSLTSP GGG PGRVKRKN
Sbjct: 142 VVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 178


>Medtr3g005430.1 | 40S ribosomal S9-like protein | HC |
           chr3:200775-202751 | 20130731
          Length = 197

 Score =  191 bits (485), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 95/97 (97%)

Query: 1   MFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 60
           MF++GLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ
Sbjct: 82  MFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 141

Query: 61  VVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKN 97
           VVNIPSFMVRVDSQKHIDFSLTSP GGG PGRVKRKN
Sbjct: 142 VVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 178


>Medtr1g068965.1 | 40S ribosomal S9-like protein | HC |
           chr1:29513381-29515006 | 20130731
          Length = 224

 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 94/97 (96%)

Query: 1   MFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 60
           MF++GLLDETQNKLDYVLALTVENFLERRLQTL FKSGMAKSIHHARVLIRQRHIRVGRQ
Sbjct: 109 MFKHGLLDETQNKLDYVLALTVENFLERRLQTLAFKSGMAKSIHHARVLIRQRHIRVGRQ 168

Query: 61  VVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKN 97
           VVNIPSFMVRVDSQKHIDFSLTSP GGG PGRVKRKN
Sbjct: 169 VVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 205


>Medtr4g108305.1 | 40S ribosomal protein S9, putative | LC |
          chr4:44927547-44927148 | 20130731
          Length = 58

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 36/38 (94%)

Query: 57 VGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVK 94
          VGRQVVNIPSFMVRVDSQKHIDFSLTSP GGG PGRVK
Sbjct: 21 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVK 58


>Medtr4g108310.1 | 40S ribosomal protein S9, putative | HC |
           chr4:44931061-44930711 | 20130731
          Length = 116

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 1   MFRYGLLDETQNKLDYVLALTVENFLERRLQTLV 34
           MF++GLLDETQNKLDYVLALTVENFLE RLQTL 
Sbjct: 82  MFKHGLLDETQNKLDYVLALTVENFLECRLQTLC 115


>Medtr0002s0590.1 | 30S ribosomal protein S4, putative | LC |
           scaffold0002:245819-242220 | 20130731
          Length = 336

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 25  FLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVR 70
            LE RL  ++F+ GMA +I  AR L+  RHI V  ++VNIPSF  +
Sbjct: 86  LLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCK 131