Miyakogusa Predicted Gene
- Lj0g3v0080799.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0080799.1 CUFF.4159.1
(972 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g032590.1 | RNA-directed RNA polymerase | HC | chr1:116144... 1627 0.0
Medtr1g032630.3 | RNA-directed RNA polymerase | HC | chr1:116348... 1132 0.0
Medtr1g032630.1 | RNA-directed RNA polymerase | HC | chr1:116348... 1132 0.0
Medtr1g032610.1 | RNA-directed RNA polymerase | HC | chr1:116260... 1115 0.0
Medtr1g032610.2 | RNA-directed RNA polymerase | HC | chr1:116260... 1113 0.0
Medtr1g032720.1 | RNA-directed RNA polymerase | LC | chr1:116909... 1107 0.0
Medtr1g032630.2 | RNA-directed RNA polymerase | HC | chr1:116348... 744 0.0
Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | ... 726 0.0
Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | ... 726 0.0
Medtr1g032710.1 | RNA-dependent RNA polymerase family protein | ... 665 0.0
Medtr3g107390.2 | RNA-dependent RNA polymerase family protein | ... 572 e-163
Medtr3g107390.1 | RNA-dependent RNA polymerase family protein | ... 572 e-163
Medtr6g088660.1 | RNA-dependent RNA polymerase family protein | ... 75 2e-13
>Medtr1g032590.1 | RNA-directed RNA polymerase | HC |
chr1:11614495-11618760 | 20130731
Length = 1140
Score = 1627 bits (4212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/981 (79%), Positives = 874/981 (89%), Gaps = 12/981 (1%)
Query: 1 MYIFFHYLSTDYKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYEKVNSRSKYFKE 60
MYIFF YLS DYK+QI+SESISRIE+H+SH T KLLLFQLR AP+IYEK S KYFKE
Sbjct: 133 MYIFFCYLSKDYKMQINSESISRIEMHRSHCRTKKLLLFQLRSAPRIYEKDVSEIKYFKE 192
Query: 61 PYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGFS 120
Y+NHWFR VDFT S CIGQSS++CF+LP+ T++PNF +Y N+Y+VDN E+ LGFS
Sbjct: 193 AYDNHWFRSVDFTPSCCIGQSSSLCFELPQNTEVPNFCQYYRNFYKVDNTFDLEKQLGFS 252
Query: 121 SNLNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEYIESA 180
SNLNFVPMVIPPEGFNLPYKILFKINSLVQH LP AIDTNLFHMVDP+RIK EY+ESA
Sbjct: 253 SNLNFVPMVIPPEGFNLPYKILFKINSLVQHSCLPLQAIDTNLFHMVDPQRIKFEYVESA 312
Query: 181 LHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQVTPSRIYFCG 240
L+KLYQMKECCY+PVQWLEKQYQRYS NS +P+S +ISLDDGLVYVHRV+VTPS+IYFCG
Sbjct: 313 LNKLYQMKECCYDPVQWLEKQYQRYSTNSSIPISSSISLDDGLVYVHRVKVTPSKIYFCG 372
Query: 241 PEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLMFTGVKR-----ETKLHQRVLT 295
PEVNLSNRVLRNYP+DTDNFLRVSFVDE+MDKL S+DL+ +G R E+K+HQRVL+
Sbjct: 373 PEVNLSNRVLRNYPEDTDNFLRVSFVDENMDKLRSSDLL-SGSSRIDVDGESKVHQRVLS 431
Query: 296 TLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDIRKWMGDFHEIRNVAKYAA 355
TL NGI IG+KKFEFLAFSSSQLRD+S WMFA R GLT DIRKWMGDFHEI+NVAKYAA
Sbjct: 432 TLTNGIEIGDKKFEFLAFSSSQLRDNSAWMFAPRTGLTTGDIRKWMGDFHEIKNVAKYAA 491
Query: 356 RLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFRD 415
RLGQSFSSSRETVSVGRHEIE+IPDIE +RG++ YCFSDGIGKIS ELAQ VA KCG +D
Sbjct: 492 RLGQSFSSSRETVSVGRHEIEIIPDIELKRGKIKYCFSDGIGKISYELAQEVAEKCGCKD 551
Query: 416 HV-PSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQ 474
H+ PSAFQIRYGG+KGVVA+DP+S+ KLSLR SMCK+KSENTKLDVL+WSK K CFLNRQ
Sbjct: 552 HIIPSAFQIRYGGYKGVVAVDPNSSTKLSLRNSMCKFKSENTKLDVLSWSKNKPCFLNRQ 611
Query: 475 IIILLSTLGVKDRVFRRKQREVVNQIKMISRKPFKAIDMMSHGDITNMLREMLIYGFHPT 534
+I+LLSTLGVKDR+F+RKQRE+VN++KMISRKPF A+DMMS G IT+MLREM+I GF+PT
Sbjct: 612 VIVLLSTLGVKDRIFKRKQREIVNKLKMISRKPFNALDMMSQGTITDMLREMIICGFNPT 671
Query: 535 KEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRNNV 594
EPFLSMML+T+CA+KLQELQLKTRIFV+KGR+MLGCLDETRTL YG+VFVQISLPR NV
Sbjct: 672 NEPFLSMMLRTICATKLQELQLKTRIFVRKGRSMLGCLDETRTLKYGEVFVQISLPRKNV 731
Query: 595 MSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQKGR 654
MSS+SSK GA K KY+VKGKV+VAKNPCLHPGDVRILRA+D+PSLHHMVDCVVFPQKGR
Sbjct: 732 MSSISSKDIGAKKGKYIVKGKVVVAKNPCLHPGDVRILRAIDVPSLHHMVDCVVFPQKGR 791
Query: 655 RPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVTLQDVEEHFT 714
RPHPNECSGSDLDGDIYFVCWDP LIPPHQENPMDH P +VM+V DHDVTLQDVEEHFT
Sbjct: 792 RPHPNECSGSDLDGDIYFVCWDPALIPPHQENPMDHSPPKVMHV--DHDVTLQDVEEHFT 849
Query: 715 HYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHLRPE 774
HYIVKDTLGVIA+AHTVFAD EP+KAMS SCIELAKLHSIAVDFAKSGVPAE+PQHL +
Sbjct: 850 HYIVKDTLGVIATAHTVFADKEPEKAMSHSCIELAKLHSIAVDFAKSGVPAEVPQHLHVK 909
Query: 775 KYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDHDMEVDGFDK 834
+YPDFMEK KP+YQS +IIG+LYREVKNVA QKSLKK FT+K A + YDHDM++DGF+K
Sbjct: 910 QYPDFMEKQDKPTYQSNSIIGKLYREVKNVAQQKSLKKSFTKKAANKFYDHDMKIDGFEK 969
Query: 835 YTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKDLEGVNHAVISLR 894
YT IA EYK MYD KL NLM+YYGIETEAEIISGNILKMSKSFN+RKD EG+NHAV+SLR
Sbjct: 970 YTKIACEYKQMYDTKLMNLMDYYGIETEAEIISGNILKMSKSFNDRKDKEGINHAVMSLR 1029
Query: 895 NEARRWFNEMVMKSYSQ---GDDDACAIASAWYHVTYHHGYWGCYNEGLNKNHLLSFPWC 951
NEAR WF+EM+ KS SQ GDDD+ AIASAWYHVTYH YWGCYNEGLNK+H LSFPWC
Sbjct: 1030 NEARSWFSEMIRKSNSQGGGGDDDSYAIASAWYHVTYHPSYWGCYNEGLNKDHFLSFPWC 1089
Query: 952 VHDTLIRIKKGKVSSGTYEIK 972
VHDTLI+IKK K +S Y +K
Sbjct: 1090 VHDTLIQIKKDKTNSRIYGMK 1110
>Medtr1g032630.3 | RNA-directed RNA polymerase | HC |
chr1:11634851-11640459 | 20130731
Length = 1114
Score = 1132 bits (2929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/973 (57%), Positives = 717/973 (73%), Gaps = 31/973 (3%)
Query: 6 HYLSTDYKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYE-KVNSRSKYFKEPYNN 64
H+ + +KL++S E+I +IELHQ G T K LL QL GAP+++E V + + +K+P N
Sbjct: 140 HHENKKFKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVFECNVPTSTSVYKDPLKN 199
Query: 65 H--------WFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERH 116
+ W R +DFT CIGQSSA+C +L PNF+ + +Y E++ T E
Sbjct: 200 YYRDSPDDQWIRAIDFTPCNCIGQSSAICLELSSNRDFPNFKENCVHYEEIEGQYTLESG 259
Query: 117 LGFSSNLNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEY 176
FS N + VPMV PP+G +P+ ILFK+NSLVQHG L +D + + +VDP I VE
Sbjct: 260 SSFSCNPDVVPMVAPPQGIQIPFDILFKVNSLVQHGCLSGSELDNDFYRLVDPLGINVEL 319
Query: 177 IESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQVTPSRI 236
I+ AL K+Y K+ CYEP +WL+ QY+RY + + P S ISLD+GLVYV RVQ+TP ++
Sbjct: 320 IKHALEKMYYSKDFCYEPARWLKGQYRRYLRANNPPRSPTISLDNGLVYVRRVQITPCKV 379
Query: 237 YFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLMF-TGVKRETKLHQRVLT 295
YFCGPE+N+SNRVLR++ Q DNFLRVSFVDE++D ++SADL T+++ R+L+
Sbjct: 380 YFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELDNMYSADLSSRISENGRTEIYYRILS 439
Query: 296 TLKNGITIGNKKFEFLAFSSSQLRDSSVWMFA-SRDGLTASDIRKWMGDFHEIRNVAKYA 354
L+NGI IG KFEFLAFSSSQLR++S+WMFA + GLTA IR+WMGDF I+NVAKYA
Sbjct: 440 ILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTADSIREWMGDFSRIKNVAKYA 499
Query: 355 ARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFR 414
ARLGQSF SS ET+SV R+EIE+IPD + + G Y FSDGIGKIS ELA+ VA+KCG
Sbjct: 500 ARLGQSFGSSTETLSVRRNEIEIIPDAKVKHGATEYVFSDGIGKISLELARRVAKKCG-H 558
Query: 415 DHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQ 474
D VPSAFQIRYGG+KGVVA+DP+S++KLSLRKSM KY S+N KLDVLA SK + C+LNRQ
Sbjct: 559 DSVPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMHKYDSDNIKLDVLACSKFQPCYLNRQ 618
Query: 475 IIILLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGF 531
+I LL TL VKD VF +KQ+E V Q+ I S K + +D+M G++TN+L+EMLI G+
Sbjct: 619 LITLLCTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEVLDLMCSGEVTNILKEMLICGY 678
Query: 532 HPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPR 591
P EPFLSMMLQT ASKL EL+ KTRIF+ KGRAM+G LDETRTL YG+VFVQ S
Sbjct: 679 KPDVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYS--- 735
Query: 592 NNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQ 651
+N SS S VVKG VIVAKNPCLHPGDVR+L+AVD+P+L HMVDCVVFPQ
Sbjct: 736 SNRFSSHSR----------VVKGMVIVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQ 785
Query: 652 KGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVTLQDVEE 711
KG RPHPNECSGSDLDGDIYFVCWD LIPP +PM+++ +Q + LDHDV +++VEE
Sbjct: 786 KGHRPHPNECSGSDLDGDIYFVCWDSELIPPLTIDPMEYDSAQ--PIVLDHDVEIEEVEE 843
Query: 712 HFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHL 771
+FT+YI+ D+LG+IA+AHTVFAD EP KAMS CIELAKL SIAVDF K+G+PA IP+ L
Sbjct: 844 YFTNYILNDSLGIIANAHTVFADKEPAKAMSEPCIELAKLFSIAVDFPKTGIPAVIPREL 903
Query: 772 RPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDHDMEVDG 831
++YPDFMEK K +Y+S N+IG+L+RE++ ++ + FT ++A + YD DMEVDG
Sbjct: 904 FAKEYPDFMEKADKTTYKSDNVIGKLFREIQGISTKDGSITSFTLEVAKKSYDPDMEVDG 963
Query: 832 FDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKDLEGVNHAVI 891
F Y AF YK+ YD KL NLM+YYGI+TE+EI+SGNI+KM+KSF +R+D + + AV
Sbjct: 964 FMDYVDDAFYYKSNYDEKLGNLMDYYGIKTESEILSGNIMKMAKSFTKRRDADAITMAVR 1023
Query: 892 SLRNEARRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGLNKNHLLSFPWC 951
SLR EAR WFN+ S G DDA A ASAWY+VTYHH Y+G YNEG+ ++H LSFPWC
Sbjct: 1024 SLRKEARSWFNDG-SASVDSGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWC 1082
Query: 952 VHDTLIRIKKGKV 964
V+ L++IKK K
Sbjct: 1083 VYHLLVQIKKEKA 1095
>Medtr1g032630.1 | RNA-directed RNA polymerase | HC |
chr1:11634851-11640459 | 20130731
Length = 1114
Score = 1132 bits (2929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/973 (57%), Positives = 717/973 (73%), Gaps = 31/973 (3%)
Query: 6 HYLSTDYKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYE-KVNSRSKYFKEPYNN 64
H+ + +KL++S E+I +IELHQ G T K LL QL GAP+++E V + + +K+P N
Sbjct: 140 HHENKKFKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVFECNVPTSTSVYKDPLKN 199
Query: 65 H--------WFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERH 116
+ W R +DFT CIGQSSA+C +L PNF+ + +Y E++ T E
Sbjct: 200 YYRDSPDDQWIRAIDFTPCNCIGQSSAICLELSSNRDFPNFKENCVHYEEIEGQYTLESG 259
Query: 117 LGFSSNLNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEY 176
FS N + VPMV PP+G +P+ ILFK+NSLVQHG L +D + + +VDP I VE
Sbjct: 260 SSFSCNPDVVPMVAPPQGIQIPFDILFKVNSLVQHGCLSGSELDNDFYRLVDPLGINVEL 319
Query: 177 IESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQVTPSRI 236
I+ AL K+Y K+ CYEP +WL+ QY+RY + + P S ISLD+GLVYV RVQ+TP ++
Sbjct: 320 IKHALEKMYYSKDFCYEPARWLKGQYRRYLRANNPPRSPTISLDNGLVYVRRVQITPCKV 379
Query: 237 YFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLMF-TGVKRETKLHQRVLT 295
YFCGPE+N+SNRVLR++ Q DNFLRVSFVDE++D ++SADL T+++ R+L+
Sbjct: 380 YFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELDNMYSADLSSRISENGRTEIYYRILS 439
Query: 296 TLKNGITIGNKKFEFLAFSSSQLRDSSVWMFA-SRDGLTASDIRKWMGDFHEIRNVAKYA 354
L+NGI IG KFEFLAFSSSQLR++S+WMFA + GLTA IR+WMGDF I+NVAKYA
Sbjct: 440 ILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTADSIREWMGDFSRIKNVAKYA 499
Query: 355 ARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFR 414
ARLGQSF SS ET+SV R+EIE+IPD + + G Y FSDGIGKIS ELA+ VA+KCG
Sbjct: 500 ARLGQSFGSSTETLSVRRNEIEIIPDAKVKHGATEYVFSDGIGKISLELARRVAKKCG-H 558
Query: 415 DHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQ 474
D VPSAFQIRYGG+KGVVA+DP+S++KLSLRKSM KY S+N KLDVLA SK + C+LNRQ
Sbjct: 559 DSVPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMHKYDSDNIKLDVLACSKFQPCYLNRQ 618
Query: 475 IIILLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGF 531
+I LL TL VKD VF +KQ+E V Q+ I S K + +D+M G++TN+L+EMLI G+
Sbjct: 619 LITLLCTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEVLDLMCSGEVTNILKEMLICGY 678
Query: 532 HPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPR 591
P EPFLSMMLQT ASKL EL+ KTRIF+ KGRAM+G LDETRTL YG+VFVQ S
Sbjct: 679 KPDVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYS--- 735
Query: 592 NNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQ 651
+N SS S VVKG VIVAKNPCLHPGDVR+L+AVD+P+L HMVDCVVFPQ
Sbjct: 736 SNRFSSHSR----------VVKGMVIVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQ 785
Query: 652 KGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVTLQDVEE 711
KG RPHPNECSGSDLDGDIYFVCWD LIPP +PM+++ +Q + LDHDV +++VEE
Sbjct: 786 KGHRPHPNECSGSDLDGDIYFVCWDSELIPPLTIDPMEYDSAQ--PIVLDHDVEIEEVEE 843
Query: 712 HFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHL 771
+FT+YI+ D+LG+IA+AHTVFAD EP KAMS CIELAKL SIAVDF K+G+PA IP+ L
Sbjct: 844 YFTNYILNDSLGIIANAHTVFADKEPAKAMSEPCIELAKLFSIAVDFPKTGIPAVIPREL 903
Query: 772 RPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDHDMEVDG 831
++YPDFMEK K +Y+S N+IG+L+RE++ ++ + FT ++A + YD DMEVDG
Sbjct: 904 FAKEYPDFMEKADKTTYKSDNVIGKLFREIQGISTKDGSITSFTLEVAKKSYDPDMEVDG 963
Query: 832 FDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKDLEGVNHAVI 891
F Y AF YK+ YD KL NLM+YYGI+TE+EI+SGNI+KM+KSF +R+D + + AV
Sbjct: 964 FMDYVDDAFYYKSNYDEKLGNLMDYYGIKTESEILSGNIMKMAKSFTKRRDADAITMAVR 1023
Query: 892 SLRNEARRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGLNKNHLLSFPWC 951
SLR EAR WFN+ S G DDA A ASAWY+VTYHH Y+G YNEG+ ++H LSFPWC
Sbjct: 1024 SLRKEARSWFNDG-SASVDSGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWC 1082
Query: 952 VHDTLIRIKKGKV 964
V+ L++IKK K
Sbjct: 1083 VYHLLVQIKKEKA 1095
>Medtr1g032610.1 | RNA-directed RNA polymerase | HC |
chr1:11626089-11631992 | 20130731
Length = 1117
Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/970 (57%), Positives = 708/970 (72%), Gaps = 37/970 (3%)
Query: 12 YKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYEKVNSRS------------KYFK 59
+KL++S E+I +IELHQ T K LL QL GAP+++E + S YF
Sbjct: 149 FKLELSYENIWKIELHQPRSKTTKYLLIQLIGAPRVFELYSPTSDDAYNVYEDLSKNYFS 208
Query: 60 EPYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGF 119
+P ++ W R VDFT CIGQSSA+C +LP PNFR ++ Y E E F
Sbjct: 209 DPPDDQWIRAVDFTPCSCIGQSSALCLELPSNRDFPNFRENFAQYEESAGPYMLESGSPF 268
Query: 120 SSNLNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEYIES 179
S NL+ VPMV PP+G +P+ ILFK+NSLVQHG L +D +H+VDP R+ VE IE+
Sbjct: 269 SCNLDVVPMVSPPQGIQIPFDILFKVNSLVQHGCLSGSELDNAFYHLVDPTRVNVELIEN 328
Query: 180 ALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQVTPSRIYFC 239
AL K+Y + CYEPV+WL+ QY+ Y ++ LP S ISLD+GLVYV R Q+TP ++YFC
Sbjct: 329 ALEKMYYSNDFCYEPVRWLKDQYKMYHSSNNLPRSPTISLDNGLVYVRRAQITPCKVYFC 388
Query: 240 GPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLMF-TGVKRETKLHQRVLTTLK 298
GPE+N+SNRVLR Y + DNFLRVSFVDE++DKL+S+DL V T ++ R+L+ L+
Sbjct: 389 GPEINVSNRVLRKYKKHMDNFLRVSFVDEELDKLYSSDLSSRISVGGRTDIYYRILSILR 448
Query: 299 NGITIGNKKFEFLAFSSSQLRDSSVWMFA-SRDGLTASDIRKWMGDFHEIRNVAKYAARL 357
NGI IG+KKFEFLAFSSSQLR+SS+WMFA + G TA IR+WMGDF I+NVAKYAARL
Sbjct: 449 NGIVIGDKKFEFLAFSSSQLRESSLWMFARTPTGDTAGSIREWMGDFSRIKNVAKYAARL 508
Query: 358 GQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFRDHV 417
GQSF SS ET +V EIE+I D+ + Y FSDGIGKIS ELA+ VA+KCG+ D +
Sbjct: 509 GQSFGSSTETTTVSSTEIEIILDVH---NKTKYVFSDGIGKISLELARRVAQKCGY-DSM 564
Query: 418 PSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQIII 477
PSAFQIRYGG+KGVVA+DP+S++KLSLR SM KY S+NT LDVLA SK + C+LNRQ+I
Sbjct: 565 PSAFQIRYGGYKGVVAVDPTSSVKLSLRMSMLKYDSDNTDLDVLACSKFRPCYLNRQLIT 624
Query: 478 LLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGFHPT 534
LLSTL V+D VF +KQ+E V+Q+ I S K + +D+MS G++TN+L+EMLI G+ P
Sbjct: 625 LLSTLDVEDSVFEKKQKEAVDQLNTILTDSTKAHEVLDLMSSGEVTNILKEMLICGYKPN 684
Query: 535 KEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRNNV 594
EPFLSMMLQT ASKL EL+ KTRIF+ KGRAM+G LDETRTL YG+VFVQ S NN
Sbjct: 685 VEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYS---NNR 741
Query: 595 MSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQKGR 654
SLS +VV GKV+VAKNPCL+PGDVR+L+AVD+P+L HMVDCVVFPQKG
Sbjct: 742 EDSLS----------HVVNGKVVVAKNPCLYPGDVRVLKAVDVPALRHMVDCVVFPQKGH 791
Query: 655 RPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVTLQDVEEHFT 714
RPHPNECSGSDLDGDIYFVCWD LIPP +PM+++ ++ + LDHDV +++V+++FT
Sbjct: 792 RPHPNECSGSDLDGDIYFVCWDSELIPPKTIDPMEYDSAK--PIVLDHDVEIEEVQKYFT 849
Query: 715 HYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHLRPE 774
YI+ D LG+IA+AHTVFAD EP KAM+ C+ELAKL S AVDF K+G+PAEIP+ L P
Sbjct: 850 DYILNDCLGIIANAHTVFADKEPGKAMADPCVELAKLFSTAVDFPKTGIPAEIPRGLFPT 909
Query: 775 KYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDHDMEVDGFDK 834
+YPDFMEKP KP Y+SKN+IG+L+RE++ ++ + FT ++A + YD DME +GF
Sbjct: 910 EYPDFMEKPDKPIYKSKNVIGKLFREIQGISTKDGSITSFTLEVAKESYDSDMEFEGFMD 969
Query: 835 YTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKDLEGVNHAVISLR 894
Y AF +K YD KL NLM+YYGI+TEAEI+SGNI+KMSKSF +++D + + AV SLR
Sbjct: 970 YVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIMKMSKSFTKKRDADAITMAVRSLR 1029
Query: 895 NEARRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGLNKNHLLSFPWCVHD 954
EAR WF + G DDA A ASAWY+VTYHH Y+G YNEG+ ++H LSFPWCV+
Sbjct: 1030 KEARSWFTDS-GAGVDSGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWCVYH 1088
Query: 955 TLIRIKKGKV 964
L++IKK K
Sbjct: 1089 LLVQIKKEKA 1098
>Medtr1g032610.2 | RNA-directed RNA polymerase | HC |
chr1:11626089-11631992 | 20130731
Length = 1054
Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/970 (57%), Positives = 708/970 (72%), Gaps = 37/970 (3%)
Query: 12 YKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYEKVNSRS------------KYFK 59
+KL++S E+I +IELHQ T K LL QL GAP+++E + S YF
Sbjct: 86 FKLELSYENIWKIELHQPRSKTTKYLLIQLIGAPRVFELYSPTSDDAYNVYEDLSKNYFS 145
Query: 60 EPYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGF 119
+P ++ W R VDFT CIGQSSA+C +LP PNFR ++ Y E E F
Sbjct: 146 DPPDDQWIRAVDFTPCSCIGQSSALCLELPSNRDFPNFRENFAQYEESAGPYMLESGSPF 205
Query: 120 SSNLNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEYIES 179
S NL+ VPMV PP+G +P+ ILFK+NSLVQHG L +D +H+VDP R+ VE IE+
Sbjct: 206 SCNLDVVPMVSPPQGIQIPFDILFKVNSLVQHGCLSGSELDNAFYHLVDPTRVNVELIEN 265
Query: 180 ALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQVTPSRIYFC 239
AL K+Y + CYEPV+WL+ QY+ Y ++ LP S ISLD+GLVYV R Q+TP ++YFC
Sbjct: 266 ALEKMYYSNDFCYEPVRWLKDQYKMYHSSNNLPRSPTISLDNGLVYVRRAQITPCKVYFC 325
Query: 240 GPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLMF-TGVKRETKLHQRVLTTLK 298
GPE+N+SNRVLR Y + DNFLRVSFVDE++DKL+S+DL V T ++ R+L+ L+
Sbjct: 326 GPEINVSNRVLRKYKKHMDNFLRVSFVDEELDKLYSSDLSSRISVGGRTDIYYRILSILR 385
Query: 299 NGITIGNKKFEFLAFSSSQLRDSSVWMFA-SRDGLTASDIRKWMGDFHEIRNVAKYAARL 357
NGI IG+KKFEFLAFSSSQLR+SS+WMFA + G TA IR+WMGDF I+NVAKYAARL
Sbjct: 386 NGIVIGDKKFEFLAFSSSQLRESSLWMFARTPTGDTAGSIREWMGDFSRIKNVAKYAARL 445
Query: 358 GQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFRDHV 417
GQSF SS ET +V EIE+I D+ + Y FSDGIGKIS ELA+ VA+KCG+ D +
Sbjct: 446 GQSFGSSTETTTVSSTEIEIILDVH---NKTKYVFSDGIGKISLELARRVAQKCGY-DSM 501
Query: 418 PSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQIII 477
PSAFQIRYGG+KGVVA+DP+S++KLSLR SM KY S+NT LDVLA SK + C+LNRQ+I
Sbjct: 502 PSAFQIRYGGYKGVVAVDPTSSVKLSLRMSMLKYDSDNTDLDVLACSKFRPCYLNRQLIT 561
Query: 478 LLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGFHPT 534
LLSTL V+D VF +KQ+E V+Q+ I S K + +D+MS G++TN+L+EMLI G+ P
Sbjct: 562 LLSTLDVEDSVFEKKQKEAVDQLNTILTDSTKAHEVLDLMSSGEVTNILKEMLICGYKPN 621
Query: 535 KEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRNNV 594
EPFLSMMLQT ASKL EL+ KTRIF+ KGRAM+G LDETRTL YG+VFVQ S NN
Sbjct: 622 VEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYS---NNR 678
Query: 595 MSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQKGR 654
SLS +VV GKV+VAKNPCL+PGDVR+L+AVD+P+L HMVDCVVFPQKG
Sbjct: 679 EDSLS----------HVVNGKVVVAKNPCLYPGDVRVLKAVDVPALRHMVDCVVFPQKGH 728
Query: 655 RPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVTLQDVEEHFT 714
RPHPNECSGSDLDGDIYFVCWD LIPP +PM+++ ++ + LDHDV +++V+++FT
Sbjct: 729 RPHPNECSGSDLDGDIYFVCWDSELIPPKTIDPMEYDSAK--PIVLDHDVEIEEVQKYFT 786
Query: 715 HYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHLRPE 774
YI+ D LG+IA+AHTVFAD EP KAM+ C+ELAKL S AVDF K+G+PAEIP+ L P
Sbjct: 787 DYILNDCLGIIANAHTVFADKEPGKAMADPCVELAKLFSTAVDFPKTGIPAEIPRGLFPT 846
Query: 775 KYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDHDMEVDGFDK 834
+YPDFMEKP KP Y+SKN+IG+L+RE++ ++ + FT ++A + YD DME +GF
Sbjct: 847 EYPDFMEKPDKPIYKSKNVIGKLFREIQGISTKDGSITSFTLEVAKESYDSDMEFEGFMD 906
Query: 835 YTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKDLEGVNHAVISLR 894
Y AF +K YD KL NLM+YYGI+TEAEI+SGNI+KMSKSF +++D + + AV SLR
Sbjct: 907 YVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIMKMSKSFTKKRDADAITMAVRSLR 966
Query: 895 NEARRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGLNKNHLLSFPWCVHD 954
EAR WF + G DDA A ASAWY+VTYHH Y+G YNEG+ ++H LSFPWCV+
Sbjct: 967 KEARSWFTDS-GAGVDSGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWCVYH 1025
Query: 955 TLIRIKKGKV 964
L++IKK K
Sbjct: 1026 LLVQIKKEKA 1035
>Medtr1g032720.1 | RNA-directed RNA polymerase | LC |
chr1:11690971-11682431 | 20130731
Length = 1726
Score = 1107 bits (2864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/967 (57%), Positives = 713/967 (73%), Gaps = 31/967 (3%)
Query: 12 YKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYEKVNSRSK---------YFKEPY 62
+KL++S E+I +IELH+ G T K LL QL GAPQ++E SK Y+K+
Sbjct: 758 FKLELSYENIGKIELHRPRGKTAKYLLIQLIGAPQVFELYIPNSKNVYEDPAKNYYKDSP 817
Query: 63 NNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGFSSN 122
+ W R +DFT CIG SSA+C +LP PNFR ++ +Y E++ T ER L FS N
Sbjct: 818 DEQWTRSIDFTPFSCIGHSSALCIELPSNRDFPNFRENFAHYEEIEGNYTLERGLPFSRN 877
Query: 123 LNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEYIESALH 182
L+ VP+V PP G N+P+ I+FK+N+LVQHG L +D + + +VDP ++ + +E AL
Sbjct: 878 LDVVPIVAPPRGINIPFDIMFKVNALVQHGCLSGSELDNDFYRLVDPLKMTSDCVEHALE 937
Query: 183 KLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQVTPSRIYFCGPE 242
K+Y K+ CYEP +WL+ QY+ Y +++ LP S ISLDDGLVYV RVQ+TPS++YFCGPE
Sbjct: 938 KMYYSKDFCYEPARWLKDQYKMYIKSNYLPPSPTISLDDGLVYVRRVQITPSKVYFCGPE 997
Query: 243 VNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADL-MFTGVKRETKLHQRVLTTLKNGI 301
+N+SNRVLR + + DNFLRVSFVDE +DKL+SADL TK++ R+L+ L+NGI
Sbjct: 998 INVSNRVLRRFHKHIDNFLRVSFVDEGLDKLYSADLSSHISESGRTKIYYRILSILRNGI 1057
Query: 302 TIGNKKFEFLAFSSSQLRDSSVWMFA-SRDGLTASDIRKWMGDFHEIRNVAKYAARLGQS 360
IG KKFEFLAFSSSQLR++S+WMF+ + GLTA IR+WMGDF I+NVAKYAARLGQS
Sbjct: 1058 DIGGKKFEFLAFSSSQLRENSLWMFSPTTTGLTADSIREWMGDFSRIKNVAKYAARLGQS 1117
Query: 361 FSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFRDHVPSA 420
F SS ET+SV R+EIE I D++ + G Y FSDGIGKIS ELA+ VA+KCG D +PSA
Sbjct: 1118 FGSSTETLSVSRNEIETISDVKVKHGATKYVFSDGIGKISIELARRVAKKCG-HDSMPSA 1176
Query: 421 FQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQIIILLS 480
FQIRY GFKGVVA+DP+S++KLSLRKSM KY S+N KLDVLA SK + C+LNRQ+I LLS
Sbjct: 1177 FQIRYCGFKGVVAVDPTSSLKLSLRKSMHKYDSDNIKLDVLACSKFQPCYLNRQLITLLS 1236
Query: 481 TLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGFHPTKEP 537
TL VKD VF +KQR+VVNQ+ I S K + +D+M G++ N+L++MLI G+ P EP
Sbjct: 1237 TLDVKDSVFEKKQRKVVNQLNTILTDSMKAHEVLDLMFSGEVANILKDMLICGYKPNIEP 1296
Query: 538 FLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRNNVMSS 597
FLSMMLQT ASKL EL+ +TRIF+ KGR M+G LDETRTL YG+VFVQ S N +S
Sbjct: 1297 FLSMMLQTFRASKLLELRQRTRIFIPKGRTMMGVLDETRTLEYGEVFVQYS---NKRLSG 1353
Query: 598 LSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQKGRRPH 657
LS +VVKGKV+VAKNPCLHPGDVR+L+AVD+P+L HMVDCVVFPQKG RPH
Sbjct: 1354 LS----------HVVKGKVVVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQKGHRPH 1403
Query: 658 PNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVTLQDVEEHFTHYI 717
PNECSGSDLDGDIYFVCWD LIPP PM+++ +Q LDHDV +++VEE+FT+YI
Sbjct: 1404 PNECSGSDLDGDIYFVCWDSELIPPRTIEPMEYDSAQ--PTVLDHDVEIEEVEEYFTNYI 1461
Query: 718 VKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHLRPEKYP 777
+ D+LG+IA+AH VFAD EP KAM+ CIELAKL S+AVDF K+G+PA IP HL ++YP
Sbjct: 1462 LNDSLGIIANAHIVFADKEPGKAMAEPCIELAKLFSVAVDFPKTGIPAVIPPHLFAKEYP 1521
Query: 778 DFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDHDMEVDGFDKYTT 837
DFMEKP K +Y+SKN+IG+L+RE++ ++ FT ++A + +D DME GF Y
Sbjct: 1522 DFMEKPDKTTYKSKNVIGKLFREIQGISTNDGSITSFTLEVAKESHDPDMEFVGFMDYAD 1581
Query: 838 IAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKDLEGVNHAVISLRNEA 897
AF +K YD KL NLM+YYGI+TE+EIISGNI+KMSKSF +R+D + + A+ SLR EA
Sbjct: 1582 DAFYHKTNYDYKLGNLMDYYGIKTESEIISGNIMKMSKSFTKRRDADAIAMAIKSLRKEA 1641
Query: 898 RRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGLNKNHLLSFPWCVHDTLI 957
R WFNE + S G D A ASAWY VTYHH Y+G YNEG+ ++H LSFPWCV+ L+
Sbjct: 1642 RSWFNEDNTGADS-GSDCPYAKASAWYFVTYHHSYYGLYNEGMQRDHFLSFPWCVYHLLV 1700
Query: 958 RIKKGKV 964
+IKK KV
Sbjct: 1701 QIKKEKV 1707
Score = 515 bits (1327), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/472 (54%), Positives = 337/472 (71%), Gaps = 12/472 (2%)
Query: 12 YKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYEKVNSRSK---------YFKEPY 62
+KL++S E+I +IELH+ G T K LL QL GAPQ++E SK Y+K+
Sbjct: 149 FKLELSYENIGKIELHRPRGKTAKYLLIQLIGAPQVFELYIPNSKNVYEDPAKNYYKDSP 208
Query: 63 NNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGFSSN 122
+ W R +DFT CIG SSA+C +LP PNFR ++ +Y E++ T ER L FS N
Sbjct: 209 DEQWTRSIDFTPFSCIGHSSALCIELPSNRDFPNFRENFAHYEEIEGNYTLERGLPFSRN 268
Query: 123 LNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEYIESALH 182
L+ VP+V PP G N+P+ I+FK+N+LVQHG L +D + + +VDP ++ + +E AL
Sbjct: 269 LDVVPIVAPPRGINIPFDIMFKVNALVQHGCLSGSELDNDFYRLVDPLKMTSDCVEHALE 328
Query: 183 KLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQVTPSRIYFCGPE 242
K+Y K+ CYEP +WL+ QY+ Y +++ LP S ISLDDGLVYV RVQ+TPS++YFCGPE
Sbjct: 329 KMYYSKDFCYEPARWLKDQYKMYIKSNYLPPSPTISLDDGLVYVRRVQITPSKVYFCGPE 388
Query: 243 VNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADL-MFTGVKRETKLHQRVLTTLKNGI 301
+N+SNRVLR + + DNFLRVSFVDE +DKL+SADL TK++ R+L+ L+NGI
Sbjct: 389 INVSNRVLRRFHKHIDNFLRVSFVDEGLDKLYSADLSSHISESGRTKIYYRILSILRNGI 448
Query: 302 TIGNKKFEFLAFSSSQLRDSSVWMFA-SRDGLTASDIRKWMGDFHEIRNVAKYAARLGQS 360
IG KKFEFLAFSSSQLR++S+WMF+ + GLTA IR+WMGDF I+NVAKYAARLGQS
Sbjct: 449 DIGGKKFEFLAFSSSQLRENSLWMFSPTTTGLTADSIREWMGDFSRIKNVAKYAARLGQS 508
Query: 361 FSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFRDHVPSA 420
F SS ET+SV R+EIE I D++ + G Y FSDGIGKIS ELA+ VA+KCG D +PSA
Sbjct: 509 FGSSTETLSVSRNEIETISDVKVKHGATKYVFSDGIGKISIELARRVAKKCG-HDSMPSA 567
Query: 421 FQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLN 472
FQIRYGGFKGVVA+DP+S++KLSLRKSM K S +K L K K+ L+
Sbjct: 568 FQIRYGGFKGVVAVDPTSSLKLSLRKSMHKSISGKSKELALRMGKSKTIELS 619
>Medtr1g032630.2 | RNA-directed RNA polymerase | HC |
chr1:11634851-11638361 | 20130731
Length = 789
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/664 (57%), Positives = 481/664 (72%), Gaps = 28/664 (4%)
Query: 6 HYLSTDYKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYE-KVNSRSKYFKEPYNN 64
H+ + +KL++S E+I +IELHQ G T K LL QL GAP+++E V + + +K+P N
Sbjct: 140 HHENKKFKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVFECNVPTSTSVYKDPLKN 199
Query: 65 H--------WFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERH 116
+ W R +DFT CIGQSSA+C +L PNF+ + +Y E++ T E
Sbjct: 200 YYRDSPDDQWIRAIDFTPCNCIGQSSAICLELSSNRDFPNFKENCVHYEEIEGQYTLESG 259
Query: 117 LGFSSNLNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEY 176
FS N + VPMV PP+G +P+ ILFK+NSLVQHG L +D + + +VDP I VE
Sbjct: 260 SSFSCNPDVVPMVAPPQGIQIPFDILFKVNSLVQHGCLSGSELDNDFYRLVDPLGINVEL 319
Query: 177 IESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQVTPSRI 236
I+ AL K+Y K+ CYEP +WL+ QY+RY + + P S ISLD+GLVYV RVQ+TP ++
Sbjct: 320 IKHALEKMYYSKDFCYEPARWLKGQYRRYLRANNPPRSPTISLDNGLVYVRRVQITPCKV 379
Query: 237 YFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLMF-TGVKRETKLHQRVLT 295
YFCGPE+N+SNRVLR++ Q DNFLRVSFVDE++D ++SADL T+++ R+L+
Sbjct: 380 YFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELDNMYSADLSSRISENGRTEIYYRILS 439
Query: 296 TLKNGITIGNKKFEFLAFSSSQLRDSSVWMFA-SRDGLTASDIRKWMGDFHEIRNVAKYA 354
L+NGI IG KFEFLAFSSSQLR++S+WMFA + GLTA IR+WMGDF I+NVAKYA
Sbjct: 440 ILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTADSIREWMGDFSRIKNVAKYA 499
Query: 355 ARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFR 414
ARLGQSF SS ET+SV R+EIE+IPD + + G Y FSDGIGKIS ELA+ VA+KCG
Sbjct: 500 ARLGQSFGSSTETLSVRRNEIEIIPDAKVKHGATEYVFSDGIGKISLELARRVAKKCG-H 558
Query: 415 DHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQ 474
D VPSAFQIRYGG+KGVVA+DP+S++KLSLRKSM KY S+N KLDVLA SK + C+LNRQ
Sbjct: 559 DSVPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMHKYDSDNIKLDVLACSKFQPCYLNRQ 618
Query: 475 IIILLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGF 531
+I LL TL VKD VF +KQ+E V Q+ I S K + +D+M G++TN+L+EMLI G+
Sbjct: 619 LITLLCTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEVLDLMCSGEVTNILKEMLICGY 678
Query: 532 HPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPR 591
P EPFLSMMLQT ASKL EL+ KTRIF+ KGRAM+G LDETRTL YG+VFVQ S
Sbjct: 679 KPDVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYS--- 735
Query: 592 NNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQ 651
+N SS S VVKG VIVAKNPCLHPGDVR+L+AVD+P+L HMVDCVVFPQ
Sbjct: 736 SNRFSSHSR----------VVKGMVIVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQ 785
Query: 652 KGRR 655
KG R
Sbjct: 786 KGHR 789
>Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | HC |
chr4:44020672-44015304 | 20130731
Length = 1123
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/986 (40%), Positives = 591/986 (59%), Gaps = 47/986 (4%)
Query: 12 YKLQISSESISRIELHQS-HGFTNKLLLFQLRGAPQIYEKV----------NSRSKYFKE 60
+KL+I E+I + + S G LL +LR P+IY+K+ + R ++ KE
Sbjct: 152 FKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKE 211
Query: 61 PYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGFS 120
+ W R DF+ IG S++ +++ + + + + Y E L+ E F
Sbjct: 212 NFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVFRSFPLYRENLKDLSLEDGEKFC 271
Query: 121 SNLNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEYIESA 180
S VP+V LPY+ LF++NSLV + +++ L ++ + E
Sbjct: 272 SPTETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLASVNDELIDLL--ASLDAETKAVI 329
Query: 181 LHKLYQMKECCYEPVQWLEKQYQRYS--QNSQLPVSCAISLDDGLVYVHRVQVTPSRIYF 238
KL++M CYEP++++ Q S + S LP +D+ ++ HR +TPS+IY
Sbjct: 330 FQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYC 389
Query: 239 CGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLMFTGVKR------ETKLHQR 292
GPE+ SN V++++ +F+R++FV+ED KL + + T K T++++R
Sbjct: 390 LGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAISITLKKGMFSRPLRTEIYKR 449
Query: 293 VLTTLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDIRKWMGDFHEIRNVAK 352
VL L++GI IG+K+FEFLAFS+SQLR +SVW+FAS D + A+DIR+WMG F+ IR+V+K
Sbjct: 450 VLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSK 509
Query: 353 YAARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCG 412
AAR+GQ FSSSR+T + ++++IPDIE ++YCFSDGIGKIS A+ +A K
Sbjct: 510 CAARMGQLFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLK 569
Query: 413 F-RDHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFL 471
+ +PSAFQIRYGG+KGV+A+D S KLSLRKSM K++S+N L V WS+ CFL
Sbjct: 570 LDENRIPSAFQIRYGGYKGVIAVDRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFL 629
Query: 472 NRQIIILLSTLGVKDRVFRRKQREVVNQI-KMISRK--PFKAIDMMSHGDITNMLREMLI 528
NR+II LLSTLG+KD Q + + + KM++ K ++ ++ D ++L +ML
Sbjct: 630 NREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLH 689
Query: 529 YGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQIS 588
+ P EP+LSMML+ +L +L+ + RIFV KGR ++GCLDET LNYGQVFV+I+
Sbjct: 690 RFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRIT 749
Query: 589 LPRN-NVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHH--MVD 645
+ + + + + S ++ GKV+V KNPCLHPGD+R+L AV L + D
Sbjct: 750 VAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRD 809
Query: 646 CVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVT 705
C+VFPQKG RPHPNECSG DLDGD++F+ WD LIP ENPMD+ + +DH VT
Sbjct: 810 CLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTENPMDYTGRRPRI--MDHKVT 867
Query: 706 LQDVEEHFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPA 765
L+++ + F Y++ DTLG I++AH V AD E KA S C+ELA+LHS+AVDFAK+G PA
Sbjct: 868 LEEIHQFFVDYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPA 927
Query: 766 EIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDH 825
E+P+ L+P ++PDFME+ KP Y SK ++G+LYR + LQ + K A + YDH
Sbjct: 928 EMPRSLKPREFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVMSEKFAKEAYDH 987
Query: 826 DMEVDGFDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSF--NERKDL 883
+EVDGF+ + A +++MY K+ +LM +YG TE E+++GN+ + + R+
Sbjct: 988 QLEVDGFEVFLETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYG 1047
Query: 884 EGVNHAVISLRN---EARRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGL 940
+ + +IS+++ EA+ WF Q +ASAWYHVTYH Y+ +
Sbjct: 1048 DMKDRILISVKDLQLEAKEWFESDCQPHEYQ------LMASAWYHVTYHPKYY------I 1095
Query: 941 NKNHLLSFPWCVHDTLIRIKKGKVSS 966
+ LSFPW V D L+ IK S
Sbjct: 1096 ESSTFLSFPWIVGDILLHIKSANAPS 1121
>Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | HC |
chr4:44020611-44014643 | 20130731
Length = 1277
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/982 (40%), Positives = 590/982 (60%), Gaps = 47/982 (4%)
Query: 12 YKLQISSESISRIELHQS-HGFTNKLLLFQLRGAPQIYEKV----------NSRSKYFKE 60
+KL+I E+I + + S G LL +LR P+IY+K+ + R ++ KE
Sbjct: 152 FKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKE 211
Query: 61 PYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGFS 120
+ W R DF+ IG S++ +++ + + + + Y E L+ E F
Sbjct: 212 NFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVFRSFPLYRENLKDLSLEDGEKFC 271
Query: 121 SNLNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEYIESA 180
S VP+V LPY+ LF++NSLV + +++ L ++ + E
Sbjct: 272 SPTETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLASVNDELIDLL--ASLDAETKAVI 329
Query: 181 LHKLYQMKECCYEPVQWLEKQYQRYS--QNSQLPVSCAISLDDGLVYVHRVQVTPSRIYF 238
KL++M CYEP++++ Q S + S LP +D+ ++ HR +TPS+IY
Sbjct: 330 FQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYC 389
Query: 239 CGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLMFTGVKR------ETKLHQR 292
GPE+ SN V++++ +F+R++FV+ED KL + + T K T++++R
Sbjct: 390 LGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAISITLKKGMFSRPLRTEIYKR 449
Query: 293 VLTTLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDIRKWMGDFHEIRNVAK 352
VL L++GI IG+K+FEFLAFS+SQLR +SVW+FAS D + A+DIR+WMG F+ IR+V+K
Sbjct: 450 VLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSK 509
Query: 353 YAARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCG 412
AAR+GQ FSSSR+T + ++++IPDIE ++YCFSDGIGKIS A+ +A K
Sbjct: 510 CAARMGQLFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLK 569
Query: 413 F-RDHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFL 471
+ +PSAFQIRYGG+KGV+A+D S KLSLRKSM K++S+N L V WS+ CFL
Sbjct: 570 LDENRIPSAFQIRYGGYKGVIAVDRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFL 629
Query: 472 NRQIIILLSTLGVKDRVFRRKQREVVNQI-KMISRK--PFKAIDMMSHGDITNMLREMLI 528
NR+II LLSTLG+KD Q + + + KM++ K ++ ++ D ++L +ML
Sbjct: 630 NREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLH 689
Query: 529 YGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQIS 588
+ P EP+LSMML+ +L +L+ + RIFV KGR ++GCLDET LNYGQVFV+I+
Sbjct: 690 RFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRIT 749
Query: 589 LPRN-NVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHH--MVD 645
+ + + + + S ++ GKV+V KNPCLHPGD+R+L AV L + D
Sbjct: 750 VAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRD 809
Query: 646 CVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVT 705
C+VFPQKG RPHPNECSG DLDGD++F+ WD LIP ENPMD+ + +DH VT
Sbjct: 810 CLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTENPMDYTGRRPRI--MDHKVT 867
Query: 706 LQDVEEHFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPA 765
L+++ + F Y++ DTLG I++AH V AD E KA S C+ELA+LHS+AVDFAK+G PA
Sbjct: 868 LEEIHQFFVDYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPA 927
Query: 766 EIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDH 825
E+P+ L+P ++PDFME+ KP Y SK ++G+LYR + LQ + K A + YDH
Sbjct: 928 EMPRSLKPREFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVMSEKFAKEAYDH 987
Query: 826 DMEVDGFDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSF--NERKDL 883
+EVDGF+ + A +++MY K+ +LM +YG TE E+++GN+ + + R+
Sbjct: 988 QLEVDGFEVFLETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYG 1047
Query: 884 EGVNHAVISLRN---EARRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGL 940
+ + +IS+++ EA+ WF Q +ASAWYHVTYH Y+ +
Sbjct: 1048 DMKDRILISVKDLQLEAKEWFESDCQPHEYQ------LMASAWYHVTYHPKYY------I 1095
Query: 941 NKNHLLSFPWCVHDTLIRIKKG 962
+ LSFPW V D L+ IK
Sbjct: 1096 ESSTFLSFPWIVGDILLHIKSA 1117
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 76/108 (70%)
Query: 700 LDHDVTLQDVEEHFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFA 759
L H + + + F Y++KDTLG I++AH V AD E KA S C+ELA+LHS+AVDFA
Sbjct: 1111 LLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFA 1170
Query: 760 KSGVPAEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQ 807
K+G AE+P+ L+P+++PDFME+ KP Y SK ++G+LYR + +Q
Sbjct: 1171 KTGALAEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRALVESTMQ 1218
>Medtr1g032710.1 | RNA-dependent RNA polymerase family protein | HC
| chr1:11677169-11674944 | 20130731
Length = 554
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/551 (60%), Positives = 420/551 (76%), Gaps = 19/551 (3%)
Query: 417 VPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQII 476
+PSAFQIRY GFKGVVA+DP+S++KLSLR SM KY S N LDVLA SK + C+LNRQ+I
Sbjct: 1 MPSAFQIRYRGFKGVVAVDPTSSVKLSLRMSMRKYDSVNADLDVLACSKFQPCYLNRQLI 60
Query: 477 ILLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGFHP 533
LLSTL VKD VF +KQR+VVNQ+ I S K + +D+M G++ N+L++MLI G+ P
Sbjct: 61 TLLSTLDVKDSVFEKKQRKVVNQLNTILTDSMKAHEVLDLMFSGEVANILKDMLICGYKP 120
Query: 534 TKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRNN 593
EPFLSMMLQT ASKL EL+ +TRIF+ KGRAM+G LDETRTL YG+VFVQ S R++
Sbjct: 121 NIEPFLSMMLQTFRASKLLELRQRTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSHKRHS 180
Query: 594 VMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQKG 653
+S +VVKG+V+VAKNPCLHPGDVR+L+AVD+P+L HMVDCVVFPQKG
Sbjct: 181 CLS-------------HVVKGEVVVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQKG 227
Query: 654 RRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVTLQDVEEHF 713
RPHPNECSGSDLDGDIYFVCWDP LIPP PM++ +Q + L+HDV +++VEE+F
Sbjct: 228 HRPHPNECSGSDLDGDIYFVCWDPELIPPRTIEPMEYNSAQ--STLLNHDVEIEEVEEYF 285
Query: 714 THYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHLRP 773
T+Y++ D+LG+I++AHTVFAD EP KAMS CIELAKL SIAVDF K+G+PA IP HL
Sbjct: 286 TNYMLNDSLGIISNAHTVFADKEPAKAMSEPCIELAKLFSIAVDFPKTGIPAVIPPHLFA 345
Query: 774 EKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDHDMEVDGFD 833
++YPDFMEKP K +Y+SKN+IG+L+RE++ ++ + FT ++A + YD DME +GF
Sbjct: 346 KEYPDFMEKPDKTTYKSKNVIGKLFREIQGISTEGGSLTSFTLEVAKESYDSDMEFEGFM 405
Query: 834 KYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKDLEGVNHAVISL 893
Y AF +K YD KL NLM+YYGI+TE+EI+SGNI+KMSKSF +R+D + + AV SL
Sbjct: 406 DYVDDAFYHKTNYDYKLGNLMDYYGIKTESEILSGNIMKMSKSFTKRRDADAITMAVRSL 465
Query: 894 RNEARRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGLNKNHLLSFPWCVH 953
R EAR WFN+ G DDA A ASAWY+V+YHH Y+G YNEG+ ++H LSFPWCV+
Sbjct: 466 RKEARSWFNDGA-ADVDAGSDDAYAKASAWYYVSYHHSYYGLYNEGMKRDHFLSFPWCVY 524
Query: 954 DTLIRIKKGKV 964
L++IKK K
Sbjct: 525 HLLVQIKKEKA 535
>Medtr3g107390.2 | RNA-dependent RNA polymerase family protein | HC |
chr3:49541314-49536090 | 20130731
Length = 1203
Score = 572 bits (1473), Expect = e-163, Method: Compositional matrix adjust.
Identities = 361/969 (37%), Positives = 523/969 (53%), Gaps = 121/969 (12%)
Query: 63 NNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLG-FSS 121
++ W R DFT S IG+ NYY + P RH +
Sbjct: 251 DDPWIRTTDFTPSGAIGRC---------------------NYYRIS---IPPRHGAKLNK 286
Query: 122 NLNF--------VPMVIPPEGFNLP--------------------YKILFKINSLVQHGL 153
L + +P+ PP+ N P + I+F IN++V G+
Sbjct: 287 ALEYLRRQRVPRIPLKRPPKIQNEPDFGVPMSDAFFYIDSQKDISFDIMFLINAIVHRGI 346
Query: 154 LPFLAIDTNLFHMV--DPKRIKV---EYIESALHKLYQMKECCYEPVQWLEKQYQRYSQN 208
++ F ++ PK + V ++I + H ++ + +WL + + Y +
Sbjct: 347 FNQYSLSNKFFELLKNQPKDVNVAALKHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQIS 406
Query: 209 SQLPVSCAISLDDGLVYVHRVQVTPSRIYFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDE 268
Q D ++ V R+ VTP++ Y PEV LSNRVLR + + +D FLRV+F+DE
Sbjct: 407 KQ---------SDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDE 457
Query: 269 DMDKLHSADLMF-----------TGVKRETKLHQRVLTTLKNGITIGNKKFEFLAFSSSQ 317
L++ L + +++T++++RV T L +G +K+ FLAFSS+Q
Sbjct: 458 GQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQ 517
Query: 318 LRDSSVWMFASRDGLTASDIRKWMGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEI-E 376
LRD S W FA +T DIR WMG F++ +NVAK AAR+GQ FSS+ +V V +E+
Sbjct: 518 LRDRSAWFFAEDKDITCDDIRNWMGRFNQ-KNVAKCAARMGQCFSSTYASVEVPANEVNS 576
Query: 377 MIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFRDHVPSAFQIRYGGFKGVVAIDP 436
M+PD+E NY FSDGIG I+ +LA VA K D PSA+QIRY GFKGVVA P
Sbjct: 577 MLPDVE----RNNYVFSDGIGIITTDLAVEVAEKLKL-DKAPSAYQIRYAGFKGVVACWP 631
Query: 437 S--SAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQIIILLSTLGVKDRVFRRKQR 494
+ IKLSLR SM K++S +T L++ AW++ + FLNRQII LLS L V D +F + Q
Sbjct: 632 AKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQE 691
Query: 495 EVVNQIKMISRKPFKAIDMMS-----HGDITNMLREMLIYGFHPTKEPFLSMMLQTLCAS 549
+++ + + A D+++ HG+ + ML GF P EP L ML ++ A+
Sbjct: 692 GMISSLNQMLVDRDVAYDVLTKSCAEHGNAAAI---MLSCGFSPKTEPHLRGMLNSIRAA 748
Query: 550 KLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPR-NNVMSSLSSKGNGANKS 608
+L L+ K+RIFV GR ++G LDE L GQ FVQ+S P N S S+ + K+
Sbjct: 749 QLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFS-ETKT 807
Query: 609 KYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQKGRRPHPNECSGSDLDG 668
+VVKG V++AKNPCLHPGDVR+L AVD+P LHH+ DCVVFPQKG RPH +E SGSDLDG
Sbjct: 808 VHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGSDLDG 867
Query: 669 DIYFVCWDPGLIPPHQEN--PMDHEPSQVMNVNLDHDVTLQDVEEHFTHYIVKDTLGVIA 726
D+YFV WD LIPP + + PM++ + VT+QD+ + F +V + LG I
Sbjct: 868 DLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQT--RQVTVQDIIDFFVRNMVNEQLGSIC 925
Query: 727 SAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPHKP 786
+AH V AD+ A+ +C+ LA+L + AVDF K+G +P +L+P+ YPDFM K H
Sbjct: 926 NAHVVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQ 985
Query: 787 SYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDHDMEVDGFDKYTTIAFEYKNMY 846
SY+SK I+G+LYR +K+ + F + LYD D+EV G ++ A+E + Y
Sbjct: 986 SYKSKKILGRLYRRIKDAYDKDIDAPEFNCVSSDILYDTDLEVPGSSEFIADAWEQRCSY 1045
Query: 847 DCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKD---LEGVNHAVISLRNEARRWFNE 903
D +L L+ Y ++TE E+++G I M K +N RK E + H+ +L+ E R+ F +
Sbjct: 1046 DGQLSGLLGQYKVKTEEEVVTGQIWSMPK-YNSRKQGELKERLKHSYSALKKEFRQIFEK 1104
Query: 904 MVMKSYSQGDDDACAI----ASAWYHVTYHHGYW------------GCYNEGLNKNHLLS 947
+ D + + ASAWY VTYH + + L +LS
Sbjct: 1105 LKSDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVMLS 1164
Query: 948 FPWCVHDTL 956
FPW D L
Sbjct: 1165 FPWIAVDYL 1173
>Medtr3g107390.1 | RNA-dependent RNA polymerase family protein | HC |
chr3:49541314-49536090 | 20130731
Length = 1203
Score = 572 bits (1473), Expect = e-163, Method: Compositional matrix adjust.
Identities = 361/969 (37%), Positives = 523/969 (53%), Gaps = 121/969 (12%)
Query: 63 NNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLG-FSS 121
++ W R DFT S IG+ NYY + P RH +
Sbjct: 251 DDPWIRTTDFTPSGAIGRC---------------------NYYRIS---IPPRHGAKLNK 286
Query: 122 NLNF--------VPMVIPPEGFNLP--------------------YKILFKINSLVQHGL 153
L + +P+ PP+ N P + I+F IN++V G+
Sbjct: 287 ALEYLRRQRVPRIPLKRPPKIQNEPDFGVPMSDAFFYIDSQKDISFDIMFLINAIVHRGI 346
Query: 154 LPFLAIDTNLFHMV--DPKRIKV---EYIESALHKLYQMKECCYEPVQWLEKQYQRYSQN 208
++ F ++ PK + V ++I + H ++ + +WL + + Y +
Sbjct: 347 FNQYSLSNKFFELLKNQPKDVNVAALKHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQIS 406
Query: 209 SQLPVSCAISLDDGLVYVHRVQVTPSRIYFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDE 268
Q D ++ V R+ VTP++ Y PEV LSNRVLR + + +D FLRV+F+DE
Sbjct: 407 KQ---------SDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDE 457
Query: 269 DMDKLHSADLMF-----------TGVKRETKLHQRVLTTLKNGITIGNKKFEFLAFSSSQ 317
L++ L + +++T++++RV T L +G +K+ FLAFSS+Q
Sbjct: 458 GQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQ 517
Query: 318 LRDSSVWMFASRDGLTASDIRKWMGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEI-E 376
LRD S W FA +T DIR WMG F++ +NVAK AAR+GQ FSS+ +V V +E+
Sbjct: 518 LRDRSAWFFAEDKDITCDDIRNWMGRFNQ-KNVAKCAARMGQCFSSTYASVEVPANEVNS 576
Query: 377 MIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFRDHVPSAFQIRYGGFKGVVAIDP 436
M+PD+E NY FSDGIG I+ +LA VA K D PSA+QIRY GFKGVVA P
Sbjct: 577 MLPDVE----RNNYVFSDGIGIITTDLAVEVAEKLKL-DKAPSAYQIRYAGFKGVVACWP 631
Query: 437 S--SAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQIIILLSTLGVKDRVFRRKQR 494
+ IKLSLR SM K++S +T L++ AW++ + FLNRQII LLS L V D +F + Q
Sbjct: 632 AKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQE 691
Query: 495 EVVNQIKMISRKPFKAIDMMS-----HGDITNMLREMLIYGFHPTKEPFLSMMLQTLCAS 549
+++ + + A D+++ HG+ + ML GF P EP L ML ++ A+
Sbjct: 692 GMISSLNQMLVDRDVAYDVLTKSCAEHGNAAAI---MLSCGFSPKTEPHLRGMLNSIRAA 748
Query: 550 KLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPR-NNVMSSLSSKGNGANKS 608
+L L+ K+RIFV GR ++G LDE L GQ FVQ+S P N S S+ + K+
Sbjct: 749 QLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFS-ETKT 807
Query: 609 KYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQKGRRPHPNECSGSDLDG 668
+VVKG V++AKNPCLHPGDVR+L AVD+P LHH+ DCVVFPQKG RPH +E SGSDLDG
Sbjct: 808 VHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGSDLDG 867
Query: 669 DIYFVCWDPGLIPPHQEN--PMDHEPSQVMNVNLDHDVTLQDVEEHFTHYIVKDTLGVIA 726
D+YFV WD LIPP + + PM++ + VT+QD+ + F +V + LG I
Sbjct: 868 DLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQT--RQVTVQDIIDFFVRNMVNEQLGSIC 925
Query: 727 SAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPHKP 786
+AH V AD+ A+ +C+ LA+L + AVDF K+G +P +L+P+ YPDFM K H
Sbjct: 926 NAHVVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQ 985
Query: 787 SYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYDHDMEVDGFDKYTTIAFEYKNMY 846
SY+SK I+G+LYR +K+ + F + LYD D+EV G ++ A+E + Y
Sbjct: 986 SYKSKKILGRLYRRIKDAYDKDIDAPEFNCVSSDILYDTDLEVPGSSEFIADAWEQRCSY 1045
Query: 847 DCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKD---LEGVNHAVISLRNEARRWFNE 903
D +L L+ Y ++TE E+++G I M K +N RK E + H+ +L+ E R+ F +
Sbjct: 1046 DGQLSGLLGQYKVKTEEEVVTGQIWSMPK-YNSRKQGELKERLKHSYSALKKEFRQIFEK 1104
Query: 904 MVMKSYSQGDDDACAI----ASAWYHVTYHHGYW------------GCYNEGLNKNHLLS 947
+ D + + ASAWY VTYH + + L +LS
Sbjct: 1105 LKSDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVMLS 1164
Query: 948 FPWCVHDTL 956
FPW D L
Sbjct: 1165 FPWIAVDYL 1173
>Medtr6g088660.1 | RNA-dependent RNA polymerase family protein | HC
| chr6:33756998-33772645 | 20130731
Length = 974
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 126/553 (22%), Positives = 212/553 (38%), Gaps = 111/553 (20%)
Query: 333 TASDIRKWMGDFHEIRNVAKYAARLGQSFSSSRE-TVSVGRHEIEMIPDIEFRRG----- 386
T SD R + H + ++ KY AR S + V ++ IPD R G
Sbjct: 303 TMSDCRSFFMHAHLLPSIEKYMARFSLILSKTYTLNVDFTTVVVQKIPDEYCRDGNGKVV 362
Query: 387 ---EVNYCFSDGIGKISAELAQIVARKC-----------------------------GFR 414
E +DG G IS +LA++ +
Sbjct: 363 YHNEKECILTDGTGFISEDLAKLCPQNVFKGTNTKNTYIKEISNLVDQDTSQAVGVTALS 422
Query: 415 DHVPSAF-QIRY----GGFKGVVAID---PSSAIKLSLRKSMCKYKSEN-------TKLD 459
H P Q R KG + ++ P + I++ R SM K ++++ L+
Sbjct: 423 THQPPLLIQCRLFHMGSAMKGTLLVNRKLPQNTIQV--RPSMIKVETDSLTNIPSLNSLE 480
Query: 460 VLAWS-KQKSCFLNRQIIILLSTLGVKDRVFR---RKQREVVNQIKMISRKPFKAIDMMS 515
V+ S K +L++ +I LLS GV + F ++ E I R +A +
Sbjct: 481 VVTTSQKPNRAYLSKYLIALLSFGGVPNEFFMDVLKRNLEDAEHIYTNKRAALRASVNHA 540
Query: 516 HGDITNMLREMLIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDET 575
D N ML+ G P EPF+ L L ++ L+ +++++ ++G +D T
Sbjct: 541 EMDEYNA-AGMLLCGI-PLDEPFMRYHLSILAKTEKNRLR-AGKLYLEDCFYVMGTVDPT 597
Query: 576 RT--LNYGQVFVQISLPRNNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILR 633
+ L QV + + G + G V+V +NP LH GD+ ++
Sbjct: 598 ESHCLKPNQVCI------------IHENGQ--------ITGDVLVYRNPGLHFGDIHKMQ 637
Query: 634 AVDLPSLHHMVD----CVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLI------PPH 683
A + L V + FP G R +E +G D DGD+Y++ +P L+ P
Sbjct: 638 ATYVEELESYVGHGKYAIFFPCVGPRSIADEIAGGDFDGDMYWISKNPQLLQYFKSSKPW 697
Query: 684 QENPMDHEPSQVMNVNLDHDVTLQDVEEHF-----THYIVKDTLGVIASAHTVFAD---- 734
E+P + + E F T + +G+ A D
Sbjct: 698 IESPPCNSARSFCVKKPSELSAEELEEALFRLYLETRFQPSSAIGMAADGWMALMDRLLI 757
Query: 735 -----TEPKKAMSSSCIELAKLHSIAVDFA-KSGVPAEIPQHLRPEKYPDFMEKPHKPSY 788
+ K+ + + +L L+ A+D K G +IP +L E +P +ME+ S+
Sbjct: 758 LPNDRSIEKEQVKENIYKLIDLYYEALDAPKKGGGKMKIPSNLNVEMFPHYMER--NISF 815
Query: 789 QSKNIIGQLYREV 801
S +I+G +Y EV
Sbjct: 816 TSTSILGSIYDEV 828