Miyakogusa Predicted Gene

Lj0g3v0080659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080659.1 Non Characterized Hit- tr|Q7XB80|Q7XB80_ORYSJ
Putative uncharacterized protein OSJNBa0081K20.21
OS=O,67.14,2e-18,DAP3,Ribosomal protein S23/S29,
mitochondrial,CUFF.4162.1
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g031280.1 | 28S ribosomal protein S29 | HC | chr3:26989282...   131   1e-31

>Medtr3g031280.1 | 28S ribosomal protein S29 | HC |
           chr3:26989282-26993712 | 20130731
          Length = 443

 Score =  131 bits (330), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 67/72 (93%)

Query: 1   MGMVKEFQDSMRPALLVRQSFLDLRDNFRRIVDPPLWSPPGKGVKARKQVVLDGPVSCGK 60
           +GM KEF+DSMR AL+VRQSFLDLRDNF+R+VDP +WSP GKGVK RKQVVLDGPVSCGK
Sbjct: 123 IGMEKEFKDSMRTALMVRQSFLDLRDNFKRVVDPRMWSPHGKGVKVRKQVVLDGPVSCGK 182

Query: 61  SIALAMLVQWAR 72
           SIALAMLVQWAR
Sbjct: 183 SIALAMLVQWAR 194