Miyakogusa Predicted Gene

Lj0g3v0080589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080589.1 Non Characterized Hit- tr|C3Y3Q4|C3Y3Q4_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,35.81,3e-18,FAMILY NOT NAMED,NULL; DUF2838,Protein of unknown
function DUF2838,gene.g5954.t1.1
         (209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g125680.1 | plant/MOK9-4 protein | HC | chr4:52141130-5214...   281   4e-76
Medtr2g040600.1 | integral membrane protein | HC | chr2:17808876...   270   7e-73
Medtr2g039830.1 | transmembrane protein, putative | LC | chr2:17...    79   3e-15
Medtr1g008180.1 | transmembrane protein, putative | HC | chr1:77...    65   4e-11

>Medtr4g125680.1 | plant/MOK9-4 protein | HC |
           chr4:52141130-52143222 | 20130731
          Length = 338

 Score =  281 bits (718), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/171 (80%), Positives = 144/171 (84%), Gaps = 2/171 (1%)

Query: 28  DFCYYANTIFLVDLLCYPRNEKLFMVCFSFAEGPLAWALIVWRCSLVFSSLDKIVSVLIH 87
           DFCYYANTIFLVDLL YPRNEKLFMVCFSFAEGPLAWALIVWRCSLVFSS DKIV VL+H
Sbjct: 107 DFCYYANTIFLVDLLFYPRNEKLFMVCFSFAEGPLAWALIVWRCSLVFSSFDKIVGVLLH 166

Query: 88  LLPGIVFFTIRWWNPATFEAMHPEGTARRATWPYVEDKSYLWTWLFLVPLVVYSLWQLLY 147
           LLPGIV FTIRWWNPATFEAMHPEG+ +R TWPYVEDKSYLWTWLFLVPLV Y LWQ+LY
Sbjct: 167 LLPGIVIFTIRWWNPATFEAMHPEGSLQRVTWPYVEDKSYLWTWLFLVPLVAYILWQVLY 226

Query: 148 FLIVNVLRRQRFLRDPEVMNSYRQAILKEKKKSETQPSQGQL--DQASMVM 196
           FLIVNVLRRQR LRDPEVM SYR+   K KK +        L  DQ  M+M
Sbjct: 227 FLIVNVLRRQRLLRDPEVMTSYRELSKKAKKANNIWWRLSGLFGDQNRMLM 277


>Medtr2g040600.1 | integral membrane protein | HC |
           chr2:17808876-17804595 | 20130731
          Length = 348

 Score =  270 bits (690), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 138/154 (89%)

Query: 28  DFCYYANTIFLVDLLCYPRNEKLFMVCFSFAEGPLAWALIVWRCSLVFSSLDKIVSVLIH 87
           DFCYYANTIFLV LL YP+NEKLF+VCFSFAEGPLAWALIVWRCSLVFSSLDKIVSVLIH
Sbjct: 105 DFCYYANTIFLVYLLFYPKNEKLFLVCFSFAEGPLAWALIVWRCSLVFSSLDKIVSVLIH 164

Query: 88  LLPGIVFFTIRWWNPATFEAMHPEGTARRATWPYVEDKSYLWTWLFLVPLVVYSLWQLLY 147
           LLPG+VFFTIRWWNP T EAM PEG A R TWPY+EDKSYL TWLFLVPLVVY+LWQ+LY
Sbjct: 165 LLPGLVFFTIRWWNPETLEAMRPEGAAARVTWPYIEDKSYLCTWLFLVPLVVYTLWQVLY 224

Query: 148 FLIVNVLRRQRFLRDPEVMNSYRQAILKEKKKSE 181
           +LIVNVLRRQRFLRDPEVM SYR+   K +K + 
Sbjct: 225 YLIVNVLRRQRFLRDPEVMTSYRELSKKAQKANN 258


>Medtr2g039830.1 | transmembrane protein, putative | LC |
           chr2:17456465-17455385 | 20130731
          Length = 251

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 45/61 (73%), Gaps = 6/61 (9%)

Query: 114 ARRAT---WPY---VEDKSYLWTWLFLVPLVVYSLWQLLYFLIVNVLRRQRFLRDPEVMN 167
           AR  T   +PY   + DKSY+WTW+FLVPL  Y LWQLLY LIVNVL RQR LRDPE+M 
Sbjct: 78  AREKTLQEYPYKQLLADKSYIWTWMFLVPLAAYILWQLLYLLIVNVLCRQRLLRDPEIMT 137

Query: 168 S 168
           S
Sbjct: 138 S 138


>Medtr1g008180.1 | transmembrane protein, putative | HC |
           chr1:775479-774819 | 20130731
          Length = 69

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 37/51 (72%)

Query: 132 LFLVPLVVYSLWQLLYFLIVNVLRRQRFLRDPEVMNSYRQAILKEKKKSET 182
           +FLVPL  Y +WQLLY LIVNVL R+R LRDPEVM SYR+   K KK +  
Sbjct: 1   MFLVPLAAYIMWQLLYLLIVNVLCRKRLLRDPEVMTSYRELSRKAKKANNV 51