Miyakogusa Predicted Gene

Lj0g3v0080529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080529.1 Non Characterized Hit- tr|I3SA50|I3SA50_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.6,0,no
description,NULL; no description,Superoxide dismutase, copper/zinc
binding domain; Sod_Cu,Superox,CUFF.4141.1
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g101820.1 | Cu/Zn-superoxide dismutase copper chaperone | ...   451   e-127
Medtr4g057240.1 | superoxide dismutase [Cu-Zn] protein | HC | ch...    64   2e-10
Medtr7g114240.1 | superoxide dismutase [Cu-Zn] protein | HC | ch...    61   1e-09
Medtr7g114240.3 | superoxide dismutase [Cu-Zn] protein | HC | ch...    61   1e-09
Medtr7g114240.2 | superoxide dismutase [Cu-Zn] protein | HC | ch...    54   2e-07
Medtr6g029200.1 | superoxide dismutase [Cu-Zn] protein | HC | ch...    52   1e-06
Medtr6g029200.2 | superoxide dismutase [Cu-Zn] protein | HC | ch...    49   5e-06

>Medtr4g101820.1 | Cu/Zn-superoxide dismutase copper chaperone | HC
           | chr4:42120514-42125478 | 20130731
          Length = 312

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/265 (86%), Positives = 241/265 (90%), Gaps = 3/265 (1%)

Query: 55  FTLVKAFVAPPSPLRMDTKLSNQTE---HVLPELLTEYMVDMKCAGCVNSVKEKLNTIKG 111
           F LVK F   PSPL MD  LS+QT+    VLPELLTEYMVDMKC GCVN+VK KL TI G
Sbjct: 47  FRLVKTFATSPSPLLMDQNLSSQTQTDHDVLPELLTEYMVDMKCEGCVNAVKNKLQTIHG 106

Query: 112 VKNVEVDLSNQVVRILGSTPVKTMTEALEQTGRKARLIGQGVPEDFLISAAVSEFKGPNI 171
           +KNVEVDLSNQVVRILGSTPVKTMTEALEQTG+KARLIGQGVPEDFLISAAVSEFKGP I
Sbjct: 107 IKNVEVDLSNQVVRILGSTPVKTMTEALEQTGKKARLIGQGVPEDFLISAAVSEFKGPEI 166

Query: 172 FGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNEENTKEP 231
           FGVVRLAQVNMELARIEANFSGLSPGKH WSINEFGDLTRGAASTGKVFNP NEENTKEP
Sbjct: 167 FGVVRLAQVNMELARIEANFSGLSPGKHSWSINEFGDLTRGAASTGKVFNPLNEENTKEP 226

Query: 232 LGDLGTLDVDEKGEAFYTGVRENLRVGDLIGRSLVVYATEDKSEHGVAAAVIARSAGVGE 291
           LGDLGTLDV+EKGEAF+TGV+E LRV DLIGR++V+YATEDKSEHG+AAAV+ARSA VGE
Sbjct: 227 LGDLGTLDVNEKGEAFFTGVKEKLRVSDLIGRAVVLYATEDKSEHGIAAAVVARSAAVGE 286

Query: 292 NYKKLCTCDGTTIWEASDRDFVTSK 316
           NYKKLCTCDGTTIWEASD DFV SK
Sbjct: 287 NYKKLCTCDGTTIWEASDADFVPSK 311


>Medtr4g057240.1 | superoxide dismutase [Cu-Zn] protein | HC |
           chr4:20936894-20933134 | 20130731
          Length = 206

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 8/108 (7%)

Query: 173 GVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTN-----EEN 227
           GVV L Q N     +    +GL+PG HG+ ++E+GD T G  STG  FNP        E+
Sbjct: 69  GVVTLTQENEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPED 128

Query: 228 TKEPLGDLGTLDVDEKGEAFYTGVRENLRV---GDLIGRSLVVYATED 272
                GDLG +  D  G A  T V   + +     ++GR+LVV+  ED
Sbjct: 129 EIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVVGRALVVHELED 176


>Medtr7g114240.1 | superoxide dismutase [Cu-Zn] protein | HC |
           chr7:47131306-47132922 | 20130731
          Length = 152

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 170 NIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNEENTK 229
           ++ G +   Q       +  N SGL PG HG+ I+  GD T G  STG  FNP  +E+  
Sbjct: 13  DVSGTISFTQEGNGPTTVTGNLSGLKPGLHGFHIHALGDTTNGCLSTGPHFNPNGKEHGA 72

Query: 230 -----EPLGDLGTLDVDEKGEAFYTGVRENLRV---GDLIGRSLVVYATED 272
                   GDLG + V + G A +T     + +     +IGR++VV+A  D
Sbjct: 73  PEDETRHAGDLGNVTVGDDGTASFTITDNQIPLTGPNSIIGRAVVVHADPD 123


>Medtr7g114240.3 | superoxide dismutase [Cu-Zn] protein | HC |
           chr7:47131306-47132922 | 20130731
          Length = 152

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 170 NIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNEENTK 229
           ++ G +   Q       +  N SGL PG HG+ I+  GD T G  STG  FNP  +E+  
Sbjct: 13  DVSGTISFTQEGNGPTTVTGNLSGLKPGLHGFHIHALGDTTNGCLSTGPHFNPNGKEHGA 72

Query: 230 -----EPLGDLGTLDVDEKGEAFYTGVRENLRV---GDLIGRSLVVYATED 272
                   GDLG + V + G A +T     + +     +IGR++VV+A  D
Sbjct: 73  PEDETRHAGDLGNVTVGDDGTASFTITDNQIPLTGPNSIIGRAVVVHADPD 123


>Medtr7g114240.2 | superoxide dismutase [Cu-Zn] protein | HC |
           chr7:47131306-47132217 | 20130731
          Length = 130

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 170 NIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNEEN-- 227
           ++ G +   Q       +  N SGL PG HG+ I+  GD T G  STG  FNP  +E+  
Sbjct: 13  DVSGTISFTQEGNGPTTVTGNLSGLKPGLHGFHIHALGDTTNGCLSTGPHFNPNGKEHGA 72

Query: 228 ---TKEPLGDLGTLDVDEKGEAFYT 249
                   GDLG + V + G A +T
Sbjct: 73  PEDETRHAGDLGNVTVGDDGTASFT 97


>Medtr6g029200.1 | superoxide dismutase [Cu-Zn] protein | HC |
           chr6:10035658-10039807 | 20130731
          Length = 161

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 10/105 (9%)

Query: 177 LAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNEEN-----TKEP 231
           L   N     +    +GLSPG HG+ I+  GD T G  STG  FNP  +++      +  
Sbjct: 27  LQHPNGNYTHVTGKITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPTDDERH 86

Query: 232 LGDLGTLDVDEKGEAFYTGVREN----LRVGDLIGRSLVVYATED 272
            GDLG +     G A  + +R+       V  ++GR++VV+A  D
Sbjct: 87  AGDLGNIVAGPDGVAEIS-IRDGKIPLSGVHSILGRAVVVHADPD 130


>Medtr6g029200.2 | superoxide dismutase [Cu-Zn] protein | HC |
           chr6:10035658-10039807 | 20130731
          Length = 151

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 10/103 (9%)

Query: 179 QVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNEE-----NTKEPLG 233
            V      +    +GLSPG HG+ I+  GD T G  STG  FNP  ++     + +   G
Sbjct: 19  NVRGNYTHVTGKITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPTDDERHAG 78

Query: 234 DLGTLDVDEKGEAFYTGVREN----LRVGDLIGRSLVVYATED 272
           DLG +     G A  + +R+       V  ++GR++VV+A  D
Sbjct: 79  DLGNIVAGPDGVAEIS-IRDGKIPLSGVHSILGRAVVVHADPD 120