Miyakogusa Predicted Gene

Lj0g3v0079889.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0079889.1 Non Characterized Hit- tr|H3ATW0|H3ATW0_LATCH
Uncharacterized protein (Fragment) OS=Latimeria
chalum,28.69,0.000000000000001,SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN,NULL;
seg,NULL,CUFF.4101.1
         (401 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g068460.1 | zinc finger, C3HC4 type (RING finger) protein ...   448   e-126
Medtr7g074140.1 | zinc finger, C3HC4 type (RING finger) protein ...   349   3e-96
Medtr3g093660.1 | RING zinc finger protein, putative | HC | chr3...   345   3e-95

>Medtr5g068460.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr5:28979430-28987791 | 20130731
          Length = 481

 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/398 (61%), Positives = 283/398 (71%), Gaps = 36/398 (9%)

Query: 33  TVNWFGVSLP---FRSPVSFVIDY---WNSSSDSAEPVVVIPNPRPRSRIQSDXXXXXXX 86
           +V+W+G+ LP   F SP+SF++DY     S +DS   +V         R Q D       
Sbjct: 34  SVSWYGMRLPVNPFLSPISFLLDYSGILRSGNDSEGMIVNNGVSGSELRPQVDAGGAVAG 93

Query: 87  XXAVEVAISIVGRGDQLGTSSSENQVGELG---CEEEIM---SGERVRVAMSAEDRRAF- 139
             A EVAI I+G G+ +      NQVGE+G   C EE++   SG        AE R    
Sbjct: 94  SSAGEVAIRIIGAGENI-----HNQVGEVGYDDCGEELIAERSGMPGLGENDAEGRGGIE 148

Query: 140 AADNVPLV--------ALPNAISGIP--------RDSSSPYGRLDVQQIAKWSEQILPFA 183
           A++ VPLV        A    + G          RDSSS Y R D+Q +AKW EQILPF+
Sbjct: 149 ASEGVPLVSSSSSSSLAGSGQVDGEAAGNGTENNRDSSS-YQRYDIQLVAKWIEQILPFS 207

Query: 184 LLLLIVFVRQHWQGFFVTICVSAVMFKSNEIVKKQTALKGDRKVSVLLSIAFAFMFYVMC 243
           LLLL+VF+RQH QGFFVTI ++AVMFKSNEIVKKQTALKGDRKVS+L  IAFAF+ +V+C
Sbjct: 208 LLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGIAFAFILHVIC 267

Query: 244 IYWWHCNDDLLSPLAMVPPKATPPFWHTIFIVLVNDTLVRQATMAFKCLLLIYYKDSRGH 303
           IYWW+ NDD+L PLAM+PP  TP FWH IF +LVND L+RQ  MAFKC+LLIYYK  +GH
Sbjct: 268 IYWWYRNDDILYPLAMLPPNPTP-FWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGH 326

Query: 304 NFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEK 363
           NFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLN+EYGSLFSSLTTGLYLTFKLTSVVEK
Sbjct: 327 NFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEK 386

Query: 364 VRCFFSALKALSKHEVHYGAYATMEQVNAAGNLCAICQ 401
           V+CF SALKALS+ EVHYG YAT EQV AAG+LCAICQ
Sbjct: 387 VQCFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQ 424


>Medtr7g074140.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr7:27693298-27698469 | 20130731
          Length = 426

 Score =  349 bits (895), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/244 (71%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 158 RDSSSPYGRLDVQQIAKWSEQILPFALLLLIVFVRQHWQGFFVTICVSAVMFKSNEIVKK 217
           RDSS  Y R D+Q  A+W EQ+LPF+LLLL+VF+RQH QGFFVTI ++AV+FKSN+I++K
Sbjct: 128 RDSS--YQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRK 185

Query: 218 QTALKGDRKVSVLLSIAFAFMFYVMCIYWWHCNDDLLSPLAMVPPKATPPFWHTIFIVLV 277
           QTALKG+RK+ VL+ I+ AF  +V+ +YWW+ NDDL+ PL M+PPK  PPFWH IFI++V
Sbjct: 186 QTALKGERKMPVLIGISVAFTLHVVSVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMV 245

Query: 278 NDTLVRQATMAFKCLLLIYYKDSRGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLN 337
           NDTL RQA M  KC+LL+YYK+SRG N+R+Q QMLTLVEY LLLYRALLP PVWYRFFLN
Sbjct: 246 NDTLARQAAMVVKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPAPVWYRFFLN 305

Query: 338 KEYGSLFSSLTTGLYLTFKLTSVVEKVRCFFSALKALSKHEVHYGAYATMEQVNAAGNLC 397
           KEYGSLFSSL TGLYLTFKLTSVVEKV+ FF+A+KALS+ EVHYGA+AT EQV AAG+LC
Sbjct: 306 KEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVIAAGDLC 365

Query: 398 AICQ 401
           AICQ
Sbjct: 366 AICQ 369


>Medtr3g093660.1 | RING zinc finger protein, putative | HC |
           chr3:42800974-42797203 | 20130731
          Length = 302

 Score =  345 bits (886), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 182/280 (65%), Positives = 209/280 (74%), Gaps = 2/280 (0%)

Query: 116 GCEEEIMSGERVRVAMSAEDRRAFAADNVPLVALPNAISGIPRDSSSPYGRLDVQQIAKW 175
             +EE  S  R  V  S E  RA AAD V  V L + + G+  DS S Y   D QQIAK 
Sbjct: 13  ASQEEGGSSSR-NVMFSEEAHRAMAADRVRSVPLADVVGGVS-DSFSTYSWFDFQQIAKM 70

Query: 176 SEQILPFALLLLIVFVRQHWQGFFVTICVSAVMFKSNEIVKKQTALKGDRKVSVLLSIAF 235
            +QILPF+LLLLIV +R+H + FFVTI   AVMF+SNE+VKKQTALKGDRKVS LL ++F
Sbjct: 71  VDQILPFSLLLLIVLIRRHMEYFFVTIGAIAVMFRSNELVKKQTALKGDRKVSALLGLSF 130

Query: 236 AFMFYVMCIYWWHCNDDLLSPLAMVPPKATPPFWHTIFIVLVNDTLVRQATMAFKCLLLI 295
           +FM YV+CIY  + NDD+L PLAM PP+ TP FW  IFI+LVNDT+VRQ  MAFKCLLLI
Sbjct: 131 SFMLYVICIYQLYGNDDVLFPLAMFPPETTPSFWKAIFIILVNDTMVRQVAMAFKCLLLI 190

Query: 296 YYKDSRGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTF 355
           YYK+ RGHNFR Q QMLTLVEYTLLLYRA LP PVWYRFF   ++GSLFSS+ TGLYLTF
Sbjct: 191 YYKNGRGHNFRHQGQMLTLVEYTLLLYRAFLPAPVWYRFFFYMDFGSLFSSIITGLYLTF 250

Query: 356 KLTSVVEKVRCFFSALKALSKHEVHYGAYATMEQVNAAGN 395
           KLTS V+KV C   ALKALS+ E+HYG YAT EQVN   N
Sbjct: 251 KLTSAVDKVTCVLFALKALSEDEIHYGVYATPEQVNILKN 290