Miyakogusa Predicted Gene
- Lj0g3v0079379.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0079379.1 Non Characterized Hit- tr|B9RRF5|B9RRF5_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,45.45,0.00000000000002,seg,NULL,CUFF.4074.1
(441 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g086220.1 | hypothetical protein | HC | chr3:39010613-3901... 191 2e-48
Medtr3g086220.2 | hypothetical protein | HC | chr3:39010613-3901... 190 2e-48
Medtr3g086220.3 | hypothetical protein | HC | chr3:39010613-3901... 190 2e-48
Medtr2g036070.1 | hypothetical protein | HC | chr2:15304595-1530... 80 4e-15
Medtr2g036080.1 | PPR containing plant-like protein | HC | chr2:... 60 3e-09
Medtr6g016895.1 | zinc finger, C3HC4 type (RING finger) protein,... 49 7e-06
Medtr6g016895.2 | zinc finger, C3HC4 type (RING finger) protein,... 49 7e-06
>Medtr3g086220.1 | hypothetical protein | HC |
chr3:39010613-39016559 | 20130731
Length = 1188
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 135/218 (61%), Gaps = 21/218 (9%)
Query: 42 MASLSSDNTKGVFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKV 101
MA+ SD+ VFIDTNLDTH A VS HDTV DLKK I SEH S FPK G I IH IKV
Sbjct: 1 MATPISDSGTVVFIDTNLDTHLALTVSDHDTVSDLKKLIVSEHASCFPKIGQIQIHGIKV 60
Query: 102 KRKGCFYQLVDSMCVRVAFNGSKKSWFLSVEASALGEGAKSDQLVPHASPNQVASLD--- 158
KR G FY L DSM VR AF G KSWFLSV+ SAL + +++L+PH S QV S+
Sbjct: 61 KRNGHFYHLSDSMVVRSAFIGVNKSWFLSVDVSALEDSRPNEKLLPHGSLRQVESIGIVN 120
Query: 159 -----------------NLQLLQLENKQGEGQGIHNVSPCVSEQTDRGAVKNLKASVKLV 201
N Q LENK+ + +G+ VSPCVSE T + V NL+ VKL+
Sbjct: 121 NALVGSGGDNNGIILPCNSQFQLLENKKDKREGVRVVSPCVSEHTAKDGVANLENGVKLL 180
Query: 202 GNNEDGIPVHGSIPEAEERDFVNREVLPSLHIQCEVDG 239
G+++ IP+ GS + ++R +N EV PSL ++CEVDG
Sbjct: 181 GDDDTAIPLLGSNSKTDDRRHLNNEV-PSLPMECEVDG 217
>Medtr3g086220.2 | hypothetical protein | HC |
chr3:39010613-39016559 | 20130731
Length = 1155
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 135/218 (61%), Gaps = 21/218 (9%)
Query: 42 MASLSSDNTKGVFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKV 101
MA+ SD+ VFIDTNLDTH A VS HDTV DLKK I SEH S FPK G I IH IKV
Sbjct: 1 MATPISDSGTVVFIDTNLDTHLALTVSDHDTVSDLKKLIVSEHASCFPKIGQIQIHGIKV 60
Query: 102 KRKGCFYQLVDSMCVRVAFNGSKKSWFLSVEASALGEGAKSDQLVPHASPNQVASLD--- 158
KR G FY L DSM VR AF G KSWFLSV+ SAL + +++L+PH S QV S+
Sbjct: 61 KRNGHFYHLSDSMVVRSAFIGVNKSWFLSVDVSALEDSRPNEKLLPHGSLRQVESIGIVN 120
Query: 159 -----------------NLQLLQLENKQGEGQGIHNVSPCVSEQTDRGAVKNLKASVKLV 201
N Q LENK+ + +G+ VSPCVSE T + V NL+ VKL+
Sbjct: 121 NALVGSGGDNNGIILPCNSQFQLLENKKDKREGVRVVSPCVSEHTAKDGVANLENGVKLL 180
Query: 202 GNNEDGIPVHGSIPEAEERDFVNREVLPSLHIQCEVDG 239
G+++ IP+ GS + ++R +N EV PSL ++CEVDG
Sbjct: 181 GDDDTAIPLLGSNSKTDDRRHLNNEV-PSLPMECEVDG 217
>Medtr3g086220.3 | hypothetical protein | HC |
chr3:39010613-39016559 | 20130731
Length = 1148
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 135/218 (61%), Gaps = 21/218 (9%)
Query: 42 MASLSSDNTKGVFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKV 101
MA+ SD+ VFIDTNLDTH A VS HDTV DLKK I SEH S FPK G I IH IKV
Sbjct: 1 MATPISDSGTVVFIDTNLDTHLALTVSDHDTVSDLKKLIVSEHASCFPKIGQIQIHGIKV 60
Query: 102 KRKGCFYQLVDSMCVRVAFNGSKKSWFLSVEASALGEGAKSDQLVPHASPNQVASLD--- 158
KR G FY L DSM VR AF G KSWFLSV+ SAL + +++L+PH S QV S+
Sbjct: 61 KRNGHFYHLSDSMVVRSAFIGVNKSWFLSVDVSALEDSRPNEKLLPHGSLRQVESIGIVN 120
Query: 159 -----------------NLQLLQLENKQGEGQGIHNVSPCVSEQTDRGAVKNLKASVKLV 201
N Q LENK+ + +G+ VSPCVSE T + V NL+ VKL+
Sbjct: 121 NALVGSGGDNNGIILPCNSQFQLLENKKDKREGVRVVSPCVSEHTAKDGVANLENGVKLL 180
Query: 202 GNNEDGIPVHGSIPEAEERDFVNREVLPSLHIQCEVDG 239
G+++ IP+ GS + ++R +N EV PSL ++CEVDG
Sbjct: 181 GDDDTAIPLLGSNSKTDDRRHLNNEV-PSLPMECEVDG 217
>Medtr2g036070.1 | hypothetical protein | HC |
chr2:15304595-15307390 | 20130731
Length = 381
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 87/197 (44%), Gaps = 24/197 (12%)
Query: 52 GVFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQLV 111
VF DTNL T A + H T LK+ + H + P G I +H + VKRK CFY L
Sbjct: 9 AVFADTNLGTRIAFNAPSHITAGTLKRDFEQVHFTCLPDIGEIQVHGLMVKRKSCFYYLP 68
Query: 112 DSMCVRVAFNGSKKSWFLSVEASALGEGAKSDQLVPHASPNQVASLDNLQLLQ---LENK 168
DS+ +R F +++WFL VE L +L H+ P A L N Q L ENK
Sbjct: 69 DSLPIRYVFPKMRETWFLHVEVGHL-------KLRLHSLPCDAAILSNHQDLMTYDCENK 121
Query: 169 ------QGEGQGIHNVSPCVSEQTDRGAVKNLKASVKLVGNNEDGIPVHGS--IPEAEER 220
+ +G+H PC + A+ + +K GN+ + H + +PE
Sbjct: 122 TRCNSEEKRQEGLH---PCAYLSEENEAINQV---LKEKGNSHENYKQHTASGMPERHSC 175
Query: 221 DFVNREVLPSLHIQCEV 237
F ++ QC +
Sbjct: 176 GFGDKPTSTVSKSQCPI 192
>Medtr2g036080.1 | PPR containing plant-like protein | HC |
chr2:15308501-15315184 | 20130731
Length = 1388
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 52 GVFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQLV 111
VF DT+L TH A +V H T LK+ H + P G I +H + VKRK FY L
Sbjct: 1215 AVFADTDLGTHIAFNVPPHITTGALKRDFVKVHFTCLPDIGEIQVHGLMVKRKSSFYYLP 1274
Query: 112 DSMCVRVAFNGSKKSW 127
DS+ ++ F ++ +W
Sbjct: 1275 DSLPIKYVFPKTRDTW 1290
>Medtr6g016895.1 | zinc finger, C3HC4 type (RING finger) protein,
putative | HC | chr6:6583310-6579005 | 20130731
Length = 465
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 398 KIEHAATTDQKLCSLTIPCDNLASGTLIPMDQELP 432
K+EHA TTDQK S TIPCD +S IP+DQE P
Sbjct: 367 KVEHADTTDQKAYSQTIPCDYTSSDVFIPIDQEFP 401
>Medtr6g016895.2 | zinc finger, C3HC4 type (RING finger) protein,
putative | HC | chr6:6583491-6578659 | 20130731
Length = 462
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 398 KIEHAATTDQKLCSLTIPCDNLASGTLIPMDQELP 432
K+EHA TTDQK S TIPCD +S IP+DQE P
Sbjct: 367 KVEHADTTDQKAYSQTIPCDYTSSDVFIPIDQEFP 401