Miyakogusa Predicted Gene

Lj0g3v0079229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0079229.1 Non Characterized Hit- tr|K4CNM2|K4CNM2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40.74,4e-18,seg,NULL,CUFF.4062.1
         (158 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g054455.1 | transmembrane protein, putative | HC | chr1:23...   250   4e-67
Medtr4g053290.1 | transmembrane protein, putative | HC | chr4:19...    74   8e-14

>Medtr1g054455.1 | transmembrane protein, putative | HC |
           chr1:23545348-23538605 | 20130731
          Length = 158

 Score =  250 bits (639), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 122/158 (77%), Positives = 131/158 (82%)

Query: 1   MGTREVYEQKLKTGNLDHDPTLNPGLGSARCPRCLSLLNPNPERGEWTINSVLHDATAVA 60
           MGTREVYE+KL+ GNL  DPTLNPG+GSARCPRCLSLLNPN ERGEWTI  VLHDATA+ 
Sbjct: 1   MGTREVYEEKLRNGNLHFDPTLNPGVGSARCPRCLSLLNPNSERGEWTITPVLHDATAIV 60

Query: 61  GSGIGSMLSAVHGLNTGLPYLQNRLKGPKWLPFVVGLPPLLIFSGASAAFGGYMLPKFTQ 120
           GSG+G MLSAVHGLN GLPYLQNRLKGPKWLPFVVG+PPLLIF+GASAAFGGY+LPKF Q
Sbjct: 61  GSGVGGMLSAVHGLNNGLPYLQNRLKGPKWLPFVVGIPPLLIFAGASAAFGGYVLPKFAQ 120

Query: 121 LTVTXXXXXXXXXXXGISLLTRHIEDKSNSETQHLKRL 158
           LTVT           GISLLTRHIE+   S   HLKRL
Sbjct: 121 LTVTSYYASSSASHYGISLLTRHIEENYKSNPPHLKRL 158


>Medtr4g053290.1 | transmembrane protein, putative | HC |
           chr4:19252561-19256195 | 20130731
          Length = 129

 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 50/93 (53%)

Query: 30  RCPRCLSLLNPNPERGEWTINSVLHDATAVAGSGIGSMLSAVHGLNTGLPYLQNRLKGPK 89
           RC  C   L+   E  +W I  ++ D+ ++ GS +G   SA +G N  +P +   +KGP 
Sbjct: 10  RCHHCAGPLSKEMETSKWNIAPLIRDSFSMIGSAVGGTTSAFYGFNHVMPIVHRYVKGPM 69

Query: 90  WLPFVVGLPPLLIFSGASAAFGGYMLPKFTQLT 122
           W+ F+VG PP+++FS   A   G  +P   QL 
Sbjct: 70  WVHFLVGTPPVIVFSSVCAGLAGGAVPALAQLV 102