Miyakogusa Predicted Gene

Lj0g3v0078859.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078859.2 tr|Q8W197|Q8W197_VIGUN Aminoimidazole
ribonucleotide carboxylase OS=Vigna unguiculata PE=2
SV=1,84.8,0,N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase,
PurE),N5-carboxyaminoimidazole ribonucleot,CUFF.4049.2
         (634 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g080500.1 | phosphoribosylaminoimidazole carboxylase | HC ...   949   0.0  

>Medtr1g080500.1 | phosphoribosylaminoimidazole carboxylase | HC |
           chr1:35857963-35851754 | 20130731
          Length = 641

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/648 (76%), Positives = 526/648 (81%), Gaps = 22/648 (3%)

Query: 1   MLHSARTVLSGHTSTSPFAFKPT--------------KKTSSSLGFYMEQPPPLSSSLKL 46
           MLH   TV S HT TS F FK T                +SSSL FYMEQP  LS   KL
Sbjct: 1   MLHIVPTVSSRHTVTSFFPFKSTHPLSSSSSSSSSSSSSSSSSLAFYMEQPNLLS--FKL 58

Query: 47  KQCRHPHLTIQASNQHGAVSSSNDEVPVHGLSETIVGVLGGGQLGRMLCQAASKMAIKVM 106
           K    PH        + AVS  N+E  VHGLSET+VGVLGGGQLGRMLCQAAS+MAIKV+
Sbjct: 59  KHSHQPH------QANAAVSPRNEESVVHGLSETVVGVLGGGQLGRMLCQAASQMAIKVV 112

Query: 107 VLDPQENCPASSLSYHHMVGSFDDSATVEEFAKRCGVLTVEIEHVDVDTLEKLEKQGVDC 166
           VLDPQ+NCPASS S+HHMVGSFDDSATV+EFAKRC VLT EIEHVDV TLEKLEKQGVDC
Sbjct: 113 VLDPQDNCPASSFSHHHMVGSFDDSATVQEFAKRCDVLTFEIEHVDVTTLEKLEKQGVDC 172

Query: 167 HPKASTIRIIQDKYQQKVHFSQHGIPLPEFRQIDDLESAKKVGELFGYPLMLKSRRLAYD 226
            PKASTIRIIQDKYQQKVHFSQH IPLPEF ++DDLE AKKVG+ FGYPLM+KSRRLAYD
Sbjct: 173 QPKASTIRIIQDKYQQKVHFSQHDIPLPEFMRLDDLEGAKKVGKRFGYPLMIKSRRLAYD 232

Query: 227 GRGNAVAKSEEELPSAVDALGGFSRGLYAEKWAPFVKELAVIVARGRDNVISCYPVVETI 286
           GRGNAVAK EEEL SAVDALGGF RGLYAEKWAPFVKELAVIVARGRDN ISCYPVVETI
Sbjct: 233 GRGNAVAKREEELTSAVDALGGFDRGLYAEKWAPFVKELAVIVARGRDNTISCYPVVETI 292

Query: 287 HRDNICHIVKAPANVKWKIRERATEVAFNAVNSLEGAGVFAVELFLTGDGQILLNEVAPR 346
           HRDNICHIVK+PA+VKWKIRERATEVAFNAVNSLEGAGVFAVELFLT DG+ILLNEVAPR
Sbjct: 293 HRDNICHIVKSPADVKWKIRERATEVAFNAVNSLEGAGVFAVELFLTEDGEILLNEVAPR 352

Query: 347 PHNSGHHTIEACYTSQFEQHLRAVVGLPLGDPSMKTPAAIMYNIXXXXXXXXXFRLASQL 406
           PHNSGHHTIE+CYTSQ+EQHLRAVVGLPLGDPSMKTPAAIMYNI         F+LA QL
Sbjct: 353 PHNSGHHTIESCYTSQYEQHLRAVVGLPLGDPSMKTPAAIMYNILGEEEGELGFQLAHQL 412

Query: 407 IKRALTIPGATVHWYDKPEMRKQRKMGHITIVGTSLGNIESNLATIVERNKFDDKTAVAP 466
           +KRALTIPGA+VHWYDKPEMRKQRKMGHITIVG SL N++ NLATI+E    DDKTAVAP
Sbjct: 413 MKRALTIPGASVHWYDKPEMRKQRKMGHITIVGPSLSNLDGNLATILEGKTLDDKTAVAP 472

Query: 467 NVGIIMGSDSDLPVMKSAAEVLEMFGVSHEVRIVSAHRTPELMFSYASSAHDRGVKVIIX 526
            VGIIMGSDSDLPVMK AAE+LE FGV HEV IVSAHRTPE MFSYAS A +RG+KVII 
Sbjct: 473 RVGIIMGSDSDLPVMKCAAEILEKFGVPHEVEIVSAHRTPERMFSYASFASERGIKVIIA 532

Query: 527 XXXXXXHLPGMVAALTPLPVIGVPVRAXXXXXXXXXXXIVQMPRGVPXXXXXXXXXXXXG 586
                 HLPGMVAA+TPLPVIGVPVR            IVQMPRGVP            G
Sbjct: 533 GAGGAAHLPGMVAAITPLPVIGVPVRGSSLDGVDSLLSIVQMPRGVPVATIAINNATNAG 592

Query: 587 LLAVRMLGVANENLLSRMSQYQEDQKESVLIKGDKLEKDGWESYLQNT 634
           LLAVR+LGVA+ENLLSRMSQY EDQKESVL KGDKLEK GW+SYL ++
Sbjct: 593 LLAVRILGVADENLLSRMSQYLEDQKESVLQKGDKLEKLGWKSYLNSS 640