Miyakogusa Predicted Gene

Lj0g3v0078809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078809.1 Non Characterized Hit- tr|B9SEW5|B9SEW5_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,44.74,4e-19,Nup160,Nucleoporin Nup120/160; seg,NULL,CUFF.4033.1
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g063180.2 | suppressor of auxin resistance 1 protein | HC ...   168   1e-42
Medtr1g063180.1 | suppressor of auxin resistance 1 protein | HC ...   168   1e-42

>Medtr1g063180.2 | suppressor of auxin resistance 1 protein | HC |
           chr1:27819581-27840479 | 20130731
          Length = 1484

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 92/116 (79%)

Query: 2   VASAQDLVICELREKKFLFVLHLDGTLRIWDLASHGRVFTHNMGVMAMAGANFQRLWVGQ 61
           V + QDLVI E   KKF+F LHLDGTLRIWDLASH +VF+HNMGVMAM+GA+F RLWVGQ
Sbjct: 219 VGTVQDLVISEFCGKKFVFALHLDGTLRIWDLASHSKVFSHNMGVMAMSGASFLRLWVGQ 278

Query: 62  SYPELSRIPLAILYGHSPDENLGMISLHGILYNVGDRIIFSMEPSVQNLSLEEVIC 117
             P  S IPLAIL  H+ DE L MISLH ILYN GDRI+ SMEPSVQN+SLEE  C
Sbjct: 279 FDPNSSIIPLAILCRHTSDEKLEMISLHSILYNFGDRIVLSMEPSVQNISLEEGRC 334


>Medtr1g063180.1 | suppressor of auxin resistance 1 protein | HC |
           chr1:27819569-27840479 | 20130731
          Length = 1495

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 92/116 (79%)

Query: 2   VASAQDLVICELREKKFLFVLHLDGTLRIWDLASHGRVFTHNMGVMAMAGANFQRLWVGQ 61
           V + QDLVI E   KKF+F LHLDGTLRIWDLASH +VF+HNMGVMAM+GA+F RLWVGQ
Sbjct: 219 VGTVQDLVISEFCGKKFVFALHLDGTLRIWDLASHSKVFSHNMGVMAMSGASFLRLWVGQ 278

Query: 62  SYPELSRIPLAILYGHSPDENLGMISLHGILYNVGDRIIFSMEPSVQNLSLEEVIC 117
             P  S IPLAIL  H+ DE L MISLH ILYN GDRI+ SMEPSVQN+SLEE  C
Sbjct: 279 FDPNSSIIPLAILCRHTSDEKLEMISLHSILYNFGDRIVLSMEPSVQNISLEEGRC 334