Miyakogusa Predicted Gene

Lj0g3v0078789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078789.1 tr|A4S2E7|A4S2E7_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_33429,31.5,0.000000000000003,SAP30_Sin3_bdg,Histone
deacetylase complex subunit SAP30, Sin3 binding domain; SUBFAMILY NOT
NAMED,N,CUFF.4029.1
         (228 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g111670.1 | histone deacetylase complex subunit SAP30 Sin3...   398   e-111
Medtr1g021970.1 | histone deacetylase complex subunit SAP30 Sin3...   390   e-109
Medtr1g021970.2 | histone deacetylase complex subunit SAP30 Sin3...   383   e-107

>Medtr3g111670.1 | histone deacetylase complex subunit SAP30
           Sin3-binding protein | HC | chr3:52221434-52217445 |
           20130731
          Length = 231

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/233 (87%), Positives = 211/233 (90%), Gaps = 7/233 (3%)

Query: 1   MLEATMESSSVNGGGDRFSQLQSCG----DSSEEELSVLPRHTKVVVTGNNRTKSVLVGL 56
           M+EA MESS VNGGG   + LQS G    DSSEEELSVLPRHTKVVVTGNNRTKSVLVGL
Sbjct: 1   MIEA-MESS-VNGGGGFATHLQSFGGGGGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGL 58

Query: 57  QGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENTQWNGSDMAS 116
           QGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEF+N QWNGSDMAS
Sbjct: 59  QGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVQWNGSDMAS 118

Query: 117 DDTQKSHKSRHRTHRSLGSSHKTTSRSFSADSQSKGSISMPHGWTKVDLSKLEMAALWRY 176
           DDT KSHKSRHR HRSLGS HKT SRSFS DSQSKGS++MPHG TKVDLSKLEMAALWRY
Sbjct: 119 DDTHKSHKSRHRMHRSLGSCHKTMSRSFSGDSQSKGSVTMPHGSTKVDLSKLEMAALWRY 178

Query: 177 WRHFNLVDAVPNPSKEQLVDVVQRHFMSQ-QMDELQVIMGFVQAAKRLKTMCK 228
           WRHFNLVD VPNPSKEQLVDVVQRHFMSQ QMDELQVI GFV AAKR+KT+CK
Sbjct: 179 WRHFNLVDVVPNPSKEQLVDVVQRHFMSQLQMDELQVIKGFVNAAKRIKTVCK 231


>Medtr1g021970.1 | histone deacetylase complex subunit SAP30
           Sin3-binding protein | HC | chr1:6722115-6719261 |
           20130731
          Length = 226

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/231 (87%), Positives = 212/231 (91%), Gaps = 8/231 (3%)

Query: 1   MLEATMESSSVNGGGDRFSQ-LQS-CGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG 58
           MLEA MESS VNGG   FSQ  QS  GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGL+G
Sbjct: 1   MLEA-MESS-VNGG---FSQHFQSFVGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLRG 55

Query: 59  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENTQWNGSDMASDD 118
           VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIE PTG EEDDDLEFENT W+GSDMASDD
Sbjct: 56  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEPPTGLEEDDDLEFENTIWHGSDMASDD 115

Query: 119 TQKSHKSRHRTHRSLGSSHKTTSRSFSADSQSKGSISMPHGWTKVDLSKLEMAALWRYWR 178
           TQKS++SR R HRSLGSSH++ SRSFS DSQSKGSISMP GWTKVDLSKLEM+ALWRYWR
Sbjct: 116 TQKSYRSRPRMHRSLGSSHRSMSRSFSVDSQSKGSISMPQGWTKVDLSKLEMSALWRYWR 175

Query: 179 HFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRL-KTMCK 228
           HFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVI GFV+AAKRL +TMCK
Sbjct: 176 HFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIRGFVKAAKRLRRTMCK 226


>Medtr1g021970.2 | histone deacetylase complex subunit SAP30
           Sin3-binding protein | HC | chr1:6722042-6719290 |
           20130731
          Length = 225

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/231 (87%), Positives = 211/231 (91%), Gaps = 9/231 (3%)

Query: 1   MLEATMESSSVNGGGDRFSQ-LQS-CGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG 58
           MLEA MESS VNGG   FSQ  QS  GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGL+G
Sbjct: 1   MLEA-MESS-VNGG---FSQHFQSFVGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLRG 55

Query: 59  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENTQWNGSDMASDD 118
           VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIE PTG EEDDDLEFENT W+GSDMASDD
Sbjct: 56  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEPPTGLEEDDDLEFENTIWHGSDMASDD 115

Query: 119 TQKSHKSRHRTHRSLGSSHKTTSRSFSADSQSKGSISMPHGWTKVDLSKLEMAALWRYWR 178
           TQKS++SR R HRSLGSSH++ SRSFS DSQSKGSISMP GWT VDLSKLEM+ALWRYWR
Sbjct: 116 TQKSYRSRPRMHRSLGSSHRSMSRSFSVDSQSKGSISMPQGWT-VDLSKLEMSALWRYWR 174

Query: 179 HFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRL-KTMCK 228
           HFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVI GFV+AAKRL +TMCK
Sbjct: 175 HFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIRGFVKAAKRLRRTMCK 225