Miyakogusa Predicted Gene

Lj0g3v0078389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078389.1 tr|E5GC38|E5GC38_CUCME DNA binding protein
OS=Cucumis melo subsp. melo PE=4 SV=1,37.78,0.0000005,ZF_BED,Zinc
finger, BED-type predicted; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; DUF659,Doma,CUFF.3988.1
         (514 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g122510.1 | hypothetical protein | LC | chr4:50514720-5051...    54   4e-07
Medtr7g078980.1 | hypothetical protein | HC | chr7:29902007-2990...    52   1e-06

>Medtr4g122510.1 | hypothetical protein | LC |
           chr4:50514720-50515043 | 20130731
          Length = 107

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 339 DLMLEDIGKIPLIKKTIQRAISLVGFIYGHTSTLSLLRYYTKKRELVRHAVTRFATSY 396
           DL LEDIGK+P + +T +    + GFIY HT  L+ +R +T + EL+R  VTR    +
Sbjct: 37  DLSLEDIGKLPTVNRTTKTQY-IFGFIYNHTMALNTMRSHTGEAELIRSGVTRLQQPF 93


>Medtr7g078980.1 | hypothetical protein | HC |
           chr7:29902007-29902458 | 20130731
          Length = 111

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 59/137 (43%)

Query: 260 NFMVNCSAGTMFLKSVDASDYVKTGEKLFELLDSIIDEVGEENVVQVITDNGSNYVSAGK 319
           N + N S    F+K +DAS++ KT E L+ELL+                    N++  G+
Sbjct: 20  NLLKNTS---FFVKVIDASEHAKTMEILYELLN--------------------NFIEIGE 56

Query: 320 MLEEKRPNLYWTPCAAHCIDLMLEDIGKIPLIKKTIQRAISLVGFIYGHTSTLSLLRYYT 379
                                               Q  ISL+G+IY HTS+L+L+R  T
Sbjct: 57  ------------------------------------QGGISLLGYIYNHTSSLNLMRKKT 80

Query: 380 KKRELVRHAVTRFATSY 396
              ELVRH VT FAT +
Sbjct: 81  INVELVRHGVTSFATKF 97