Miyakogusa Predicted Gene

Lj0g3v0078349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078349.1 Non Characterized Hit- tr|C6SVR3|C6SVR3_SOYBN
Uncharacterized protein OS=Glycine max PE=2
SV=1,85.71,5e-18,seg,NULL,CUFF.3986.1
         (66 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g006190.1 | cytoplasmic membrane protein | HC | chr3:58592...    58   2e-09
Medtr4g030060.1 | cytoplasmic membrane protein | HC | chr4:10370...    54   5e-08

>Medtr3g006190.1 | cytoplasmic membrane protein | HC |
           chr3:585927-581249 | 20130731
          Length = 183

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 12  LLGWLVASPFILGTLYIVLLPCFKFLVQKFSTVXXXXXXXXXXXXXEISLKVRDV 66
           L GWL ASPFILG LYIV LP F+ LVQKFS+V             E+ LKVRDV
Sbjct: 130 LYGWLAASPFILGALYIVFLPLFRILVQKFSSV-PLSPKKPLLSHSELRLKVRDV 183


>Medtr4g030060.1 | cytoplasmic membrane protein | HC |
           chr4:10370995-10367508 | 20130731
          Length = 178

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 12  LLGWLVASPFILGTLYIVLLPCFKFLVQKFSTVXXXXXXXXXXXXXEISLKVRDV 66
           LLGWL ASPFIL +LY+ L+PCFK LV K ++              E+ L+VRD+
Sbjct: 125 LLGWLAASPFILASLYLTLIPCFKLLVNKLNS-PPSSPKMPLQPRPEVGLRVRDI 178