Miyakogusa Predicted Gene
- Lj0g3v0078139.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0078139.1 Non Characterized Hit- tr|A9NUN8|A9NUN8_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,57.61,3e-19,RRM_1,RNA recognition motif domain; RRM,RNA recognition
motif domain; RNA-binding domain, RBD,NULL;
,NODE_61310_length_304_cov_174.796051.path1.1
(96 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 175 8e-45
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 175 9e-45
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 156 5e-39
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 156 5e-39
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 138 1e-33
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 138 1e-33
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 138 1e-33
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 138 1e-33
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 3e-20
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 3e-20
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 8e-14
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-08
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 9e-08
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 175 bits (444), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/97 (86%), Positives = 90/97 (92%), Gaps = 1/97 (1%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAVDRVL+KTFHELNGKMVEVKRAVPKELSPGP RSPLIG
Sbjct: 138 MYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIG 197
Query: 61 SYNYGLN-RASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
NY LN RASSYLN+Y QG++M+P+GG GVRMDGRF
Sbjct: 198 YNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRF 234
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 175 bits (443), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/97 (86%), Positives = 90/97 (92%), Gaps = 1/97 (1%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAVDRVL+KTFHELNGKMVEVKRAVPKELSPGP RSPLIG
Sbjct: 138 MYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIG 197
Query: 61 SYNYGLN-RASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
NY LN RASSYLN+Y QG++M+P+GG GVRMDGRF
Sbjct: 198 YNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRF 234
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 156 bits (394), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/96 (78%), Positives = 85/96 (88%), Gaps = 1/96 (1%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAVD+VL KTFHELNGKMVEVKRAVPKELSPGP RSPL G
Sbjct: 138 MYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSG 197
Query: 61 SYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
YNYGL+R +S+LN + Q ++ + VGG G+R+DGRF
Sbjct: 198 -YNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRF 232
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 156 bits (394), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/96 (78%), Positives = 85/96 (88%), Gaps = 1/96 (1%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAVD+VL KTFHELNGKMVEVKRAVPKELSPGP RSPL G
Sbjct: 138 MYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSG 197
Query: 61 SYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
YNYGL+R +S+LN + Q ++ + VGG G+R+DGRF
Sbjct: 198 -YNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRF 232
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 81/97 (83%), Gaps = 2/97 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G
Sbjct: 68 MYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-G 126
Query: 61 SYNYG-LNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
++YG ++R S+ N +AQG+N + +GG G+R+DGR
Sbjct: 127 GFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRL 163
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 81/97 (83%), Gaps = 2/97 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G
Sbjct: 138 MYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-G 196
Query: 61 SYNYG-LNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
++YG ++R S+ N +AQG+N + +GG G+R+DGR
Sbjct: 197 GFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRL 233
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 81/97 (83%), Gaps = 2/97 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G
Sbjct: 138 MYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-G 196
Query: 61 SYNYG-LNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
++YG ++R S+ N +AQG+N + +GG G+R+DGR
Sbjct: 197 GFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRL 233
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 81/97 (83%), Gaps = 2/97 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAV++VL KTFHELNGKMVEVKRAVPK+LSP P R L G
Sbjct: 138 MYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQL-G 196
Query: 61 SYNYG-LNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
++YG ++R S+ N +AQG+N + +GG G+R+DGR
Sbjct: 197 GFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRL 233
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 47/52 (90%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPG 52
MYD NT RPRGFGFIT+D+EEAVDRVL KTFH+LNGK VEVKRA+PK+ +PG
Sbjct: 144 MYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPG 195
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 47/52 (90%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPG 52
MYD NT RPRGFGFIT+D+EEAVDRVL KTFH+LNGK VEVKRA+PK+ +PG
Sbjct: 144 MYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPG 195
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPG 52
M D T RPRGFGFIT+DSE++V V+ ++FH+LNG+ VEVKRAVP+E + G
Sbjct: 149 MQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQVEVKRAVPREGNAG 200
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVL-FKTFHELNGKMVEVKRAVPKELSPGPIRS 56
M DH+T R RGFGF+T+D+EEAVD +L E G VE+K+A PK+ + P S
Sbjct: 165 MRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAPPPSS 221
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPK 47
M D T +PRGFGFITY VD+V+ + H +N K VE+KR +P+
Sbjct: 77 MKDRKTGQPRGFGFITYADPSVVDKVIEDS-HIINSKQVEIKRTIPR 122
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELS 50
M D +T RPRGFGFITY VD+V+ + H +N K VE+KR +PK S
Sbjct: 50 MKDRHTGRPRGFGFITYADASVVDQVIQEN-HIINDKQVEIKRTIPKGAS 98
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFK-TFHELNGKMVEVKRAVPKE 48
+ DH T+R RGFGF+ +DS++AVD +L +++ VE+K+A PK+
Sbjct: 138 IRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKK 186