Miyakogusa Predicted Gene

Lj0g3v0077789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0077789.1 tr|G7I4E3|G7I4E3_MEDTR DNA polymerase I family
protein expressed OS=Medicago truncatula
GN=MTR_1g008,59.71,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; DNA POLYMERASE THETA,NULL; HELICA,CUFF.3947.1
         (719 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g008600.1 | ATP-binding; ATP-dependent helicase; DNA helic...   833   0.0  
Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | ...    60   8e-09
Medtr3g025300.2 | U5 small nuclear ribonucleoprotein helicase | ...    60   8e-09
Medtr7g075463.1 | ATP-binding; ATP-dependent helicase; DNA helic...    58   3e-08
Medtr7g075463.3 | ATP-binding; ATP-dependent helicase; DNA helic...    57   7e-08
Medtr7g075463.2 | ATP-binding; ATP-dependent helicase; DNA helic...    56   1e-07
Medtr7g075463.4 | ATP-binding; ATP-dependent helicase; DNA helic...    56   1e-07

>Medtr1g008600.1 | ATP-binding; ATP-dependent helicase; DNA helicase
           | HC | chr1:991547-976147 | 20130731
          Length = 2177

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/711 (62%), Positives = 517/711 (72%), Gaps = 46/711 (6%)

Query: 8   NRINQFYASKKRKAVSPVPKVGRFEKGARHGVDGSPSAKGTLDSYLVGSPDDCNDVGRLN 67
           NR+NQFY +KKRKA+SP PK GR EK AR   DGSPSAKG+L+ YLV S +D        
Sbjct: 56  NRLNQFYTTKKRKAISPAPKAGRIEKVARIVADGSPSAKGSLEGYLVPSQED-------- 107

Query: 68  AAASGSVKRNLASEITSSLDYGLDKQPIPSAHGHQNPQATKPGVVNEVPKASCDSLEDAI 127
                 V+R L  +I  SLD    KQP+  A   ++  A + G+ NEV       ++D++
Sbjct: 108 PVRPDLVRRKLGLDIGGSLD----KQPVSLAQEIRHLDAMRAGIENEVTM-----VDDSV 158

Query: 128 PGNSFSGFEHGAKNSELKQFVADCVSIYCGELRPRISSPSEMKVDGHKRDDSLMSVEEIS 187
             ++ S      + SELKQF A+  S+YCG+L      P E +V GHK+ DSL  VEE S
Sbjct: 159 KEHTLSDLGDVGEKSELKQFKAELFSLYCGQL------PQETRVKGHKKYDSLTLVEESS 212

Query: 188 NTMGDGSQQKCNDSSEPHVGGENISNDKMPDEVMAGVVGNTTGDVSACSAKDSGDGDAIA 247
           +       QKC+D+S  H G ENIS++K+  ++ +GV GNT   +  CSAK S  G   A
Sbjct: 213 SI-----PQKCDDTSVLHFGCENISSEKITVDMKSGVAGNTLESIPGCSAKVSDGGATNA 267

Query: 248 LDMSLRKCSYTNTPKASKSMAECYTPGSLIVKACIKDTPKSTRGSSMFSPGEAFWNEAIQ 307
            D   RKCS T+T   S +MAEC TPGSLIVKACI+ TPKSTRGSSMFSPGEAFW+EAIQ
Sbjct: 268 FDTGFRKCSNTST---SMNMAECQTPGSLIVKACIRGTPKSTRGSSMFSPGEAFWDEAIQ 324

Query: 308 LADGLCVPVVNDSSKVIEESNVAEDQAEVKNSCNLQNYDGKQRKVLDQSKSRIWDREMST 367
           LADGL VP  ND+SKVIEESNV  DQ E+K SCNLQNYDGK RK+LDQSK+         
Sbjct: 325 LADGLVVPTGNDASKVIEESNVVGDQVEMKGSCNLQNYDGKARKILDQSKN--------- 375

Query: 368 PLGLARMHTQESIKEASGLPVKHFDFSFEDKNLDENTRQNCCVDDLVNVACGAGRQYESG 427
            +GLA MHT++S+KEAS LPVKHFDFS  D N+DEN  QNC VD+ VNV CG+GR+YE  
Sbjct: 376 -IGLAEMHTKDSMKEASSLPVKHFDFS-NDHNMDENILQNCRVDNQVNVTCGSGRKYEPI 433

Query: 428 SITGHAYEKMNEVQEKASVDALGKRLCQDNASMTSN---SPPNQVMTAIGRHASDEASTP 484
           S+    +E+  EV+ K   D LGKR+ +DN++MTSN   SP N+  T +  HAS EA+TP
Sbjct: 434 SVVSRTHEQPYEVK-KILADELGKRMRKDNSNMTSNNFSSPNNEARTTLSIHASFEATTP 492

Query: 485 SSSVKLNDHLDLSSWLPPEICSIYRKKGISKLYSWQVDCLRVNGVLQRRNLVYCASTSAG 544
           SS+V L++HLDL SWL PEICSIYRKKGISKLY+WQVDCLRV+GVLQRRNLVYCASTSAG
Sbjct: 493 SSNVSLDNHLDLHSWLQPEICSIYRKKGISKLYNWQVDCLRVDGVLQRRNLVYCASTSAG 552

Query: 545 KSFVAEILMLRRVITTGKMAVLVLPYVSICAEKAEHLEQLLEPLGKHVRSYYGNQGGGTL 604
           KSFVAEILMLR+VITTGKMA+LVLPYVSIC EKAEHLE+LLEPLGKHVRSYYGNQGGG+L
Sbjct: 553 KSFVAEILMLRKVITTGKMAILVLPYVSICTEKAEHLEKLLEPLGKHVRSYYGNQGGGSL 612

Query: 605 PKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDQSRGYLLELMLTKLRYA 664
           PKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGD  RGYLLELMLTKLRYA
Sbjct: 613 PKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDPKRGYLLELMLTKLRYA 672

Query: 665 AXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMPNVAAVADWLQVPIY 715
           A                  K DP QGLQIVGMSATMPNVAAVADWLQ  +Y
Sbjct: 673 AGEGISKSSDGEGSGGSSDKNDPAQGLQIVGMSATMPNVAAVADWLQAALY 723


>Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | HC |
            chr3:7719529-7688875 | 20130731
          Length = 2081

 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 23/182 (12%)

Query: 534  NLVYCASTSAGKSFVAEILMLRRVITTGKMAVLVL-PYVSICAEK-AEHLEQLLEPLGKH 591
            N++  A T +GK+  AE+ MLR   T   M V+ + P  +I  E+ ++  ++L+  LGK 
Sbjct: 1303 NVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWRKRLVSQLGKK 1362

Query: 592  VRSYYGNQGGGTLPK-DTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDQSR 650
            +    G+     +     ++ + T EK + +         ++++G+I++DE+H++G   R
Sbjct: 1363 MVEMTGDYTPDLMALLSANIIISTPEKWDGISRNWHSRSYVTKVGLIILDEIHLLG-ADR 1421

Query: 651  GYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMPNVAAVADWL 710
            G +LE++++++RY +                       + ++ VG+S  + N   +ADWL
Sbjct: 1422 GPILEVIVSRMRYISSQTE-------------------RPVRFVGLSTALANAGDLADWL 1462

Query: 711  QV 712
             V
Sbjct: 1463 GV 1464



 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 34/191 (17%)

Query: 534 NLVYCASTSAGKSFVAEILMLRRV---ITTGKM------AVLVLPYVSICAEKAEHLEQL 584
           N++ CA T AGK+ +A I +L  +      G +       V V P  ++ AE      Q 
Sbjct: 455 NILVCAPTGAGKTNIAMISILHEIGQHFKDGYLHKDKFKIVYVAPMKALAAEVTSTFSQR 514

Query: 585 LEPLGKHVRSYYGN-QGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEM-GIIVIDEL 642
           L PL   VR   G+ Q      ++T + V T EK + +I R   +  LS +  +++IDE+
Sbjct: 515 LSPLNMSVRELTGDMQLSKNELEETQMIVTTPEKWD-VITRKSSDMSLSMLVKLLIIDEV 573

Query: 643 HMVGDQSRGYLLELMLTK-LRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMP 701
           H++ D  RG ++E ++ + LR                            ++IVG+SAT+P
Sbjct: 574 HLLND-DRGPVIEALVARTLRQVESSQSM--------------------IRIVGLSATLP 612

Query: 702 NVAAVADWLQV 712
           N   VA +L+V
Sbjct: 613 NYLEVAQFLRV 623


>Medtr3g025300.2 | U5 small nuclear ribonucleoprotein helicase | HC |
            chr3:7719529-7695186 | 20130731
          Length = 1734

 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 23/182 (12%)

Query: 534  NLVYCASTSAGKSFVAEILMLRRVITTGKMAVLVL-PYVSICAEK-AEHLEQLLEPLGKH 591
            N++  A T +GK+  AE+ MLR   T   M V+ + P  +I  E+ ++  ++L+  LGK 
Sbjct: 1303 NVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWRKRLVSQLGKK 1362

Query: 592  VRSYYGNQGGGTLPK-DTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDQSR 650
            +    G+     +     ++ + T EK + +         ++++G+I++DE+H++G   R
Sbjct: 1363 MVEMTGDYTPDLMALLSANIIISTPEKWDGISRNWHSRSYVTKVGLIILDEIHLLG-ADR 1421

Query: 651  GYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMPNVAAVADWL 710
            G +LE++++++RY +                       + ++ VG+S  + N   +ADWL
Sbjct: 1422 GPILEVIVSRMRYISSQTE-------------------RPVRFVGLSTALANAGDLADWL 1462

Query: 711  QV 712
             V
Sbjct: 1463 GV 1464



 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 34/191 (17%)

Query: 534 NLVYCASTSAGKSFVAEILMLRRV---ITTGKM------AVLVLPYVSICAEKAEHLEQL 584
           N++ CA T AGK+ +A I +L  +      G +       V V P  ++ AE      Q 
Sbjct: 455 NILVCAPTGAGKTNIAMISILHEIGQHFKDGYLHKDKFKIVYVAPMKALAAEVTSTFSQR 514

Query: 585 LEPLGKHVRSYYGN-QGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEM-GIIVIDEL 642
           L PL   VR   G+ Q      ++T + V T EK + +I R   +  LS +  +++IDE+
Sbjct: 515 LSPLNMSVRELTGDMQLSKNELEETQMIVTTPEKWD-VITRKSSDMSLSMLVKLLIIDEV 573

Query: 643 HMVGDQSRGYLLELMLTK-LRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMP 701
           H++ D  RG ++E ++ + LR                            ++IVG+SAT+P
Sbjct: 574 HLLND-DRGPVIEALVARTLRQVESSQSM--------------------IRIVGLSATLP 612

Query: 702 NVAAVADWLQV 712
           N   VA +L+V
Sbjct: 613 NYLEVAQFLRV 623


>Medtr7g075463.1 | ATP-binding; ATP-dependent helicase; DNA helicase
           | HC | chr7:28265418-28275446 | 20130731
          Length = 1252

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 33/198 (16%)

Query: 534 NLVYCASTSAGKSFVAEILMLR---RVITT-GKM--------AVLVLPYVSICAEKAEHL 581
           N+V  A T +GK+ + E+ +LR   R I++ G+          + + P  ++  EK    
Sbjct: 42  NMVISAPTGSGKTVLFELCILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDW 101

Query: 582 EQLLEPLGKHVRSYYGNQGGGTLPKDTS---VAVCTIEKANSLINRLLEEGRLS---EMG 635
            Q   P G       G+    T P++ +   + + T EK +++    +E G LS   ++ 
Sbjct: 102 NQKFGPWGICCLELTGDNESYT-PRNINEADIILTTPEKFDAVSRYGIESGGLSFFSDIA 160

Query: 636 IIVIDELHMVGDQSRGYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVG 695
           +++IDE+H++ D  RG  LE ++++++  +                  K +P+  ++ + 
Sbjct: 161 LLLIDEVHLLND-PRGAALEAIVSRIKIISCNPKM-------------KLNPLAQVRFLA 206

Query: 696 MSATMPNVAAVADWLQVP 713
           +SAT+PN+  +A WL VP
Sbjct: 207 LSATIPNIEDLAKWLLVP 224


>Medtr7g075463.3 | ATP-binding; ATP-dependent helicase; DNA helicase
           | HC | chr7:28265418-28275446 | 20130731
          Length = 1050

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 33/198 (16%)

Query: 534 NLVYCASTSAGKSFVAEILMLR---RVITT-GKM--------AVLVLPYVSICAEKAEHL 581
           N+V  A T +GK+ + E+ +LR   R I++ G+          + + P  ++  EK    
Sbjct: 42  NMVISAPTGSGKTVLFELCILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDW 101

Query: 582 EQLLEPLGKHVRSYYGNQGGGTLPKDTS---VAVCTIEKANSLINRLLEEGRLS---EMG 635
            Q   P G       G+    T P++ +   + + T EK +++    +E G LS   ++ 
Sbjct: 102 NQKFGPWGICCLELTGDNESYT-PRNINEADIILTTPEKFDAVSRYGIESGGLSFFSDIA 160

Query: 636 IIVIDELHMVGDQSRGYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVG 695
           +++IDE+H++ D  RG  LE ++++++  +                  K +P+  ++ + 
Sbjct: 161 LLLIDEVHLLND-PRGAALEAIVSRIKIISCNPKM-------------KLNPLAQVRFLA 206

Query: 696 MSATMPNVAAVADWLQVP 713
           +SAT+PN+  +A WL VP
Sbjct: 207 LSATIPNIEDLAKWLLVP 224


>Medtr7g075463.2 | ATP-binding; ATP-dependent helicase; DNA helicase
           | HC | chr7:28265418-28275446 | 20130731
          Length = 940

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 33/198 (16%)

Query: 534 NLVYCASTSAGKSFVAEILMLR---RVITT-GKM--------AVLVLPYVSICAEKAEHL 581
           N+V  A T +GK+ + E+ +LR   R I++ G+          + + P  ++  EK    
Sbjct: 42  NMVISAPTGSGKTVLFELCILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDW 101

Query: 582 EQLLEPLGKHVRSYYGNQGGGTLPKDTS---VAVCTIEKANSLINRLLEEGRLS---EMG 635
            Q   P G       G+    T P++ +   + + T EK +++    +E G LS   ++ 
Sbjct: 102 NQKFGPWGICCLELTGDNESYT-PRNINEADIILTTPEKFDAVSRYGIESGGLSFFSDIA 160

Query: 636 IIVIDELHMVGDQSRGYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVG 695
           +++IDE+H++ D  RG  LE ++++++  +                  K +P+  ++ + 
Sbjct: 161 LLLIDEVHLLND-PRGAALEAIVSRIKIISCNPKM-------------KLNPLAQVRFLA 206

Query: 696 MSATMPNVAAVADWLQVP 713
           +SAT+PN+  +A WL VP
Sbjct: 207 LSATIPNIEDLAKWLLVP 224


>Medtr7g075463.4 | ATP-binding; ATP-dependent helicase; DNA helicase
           | HC | chr7:28265418-28275446 | 20130731
          Length = 940

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 33/198 (16%)

Query: 534 NLVYCASTSAGKSFVAEILMLR---RVITT-GKM--------AVLVLPYVSICAEKAEHL 581
           N+V  A T +GK+ + E+ +LR   R I++ G+          + + P  ++  EK    
Sbjct: 42  NMVISAPTGSGKTVLFELCILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDW 101

Query: 582 EQLLEPLGKHVRSYYGNQGGGTLPKDTS---VAVCTIEKANSLINRLLEEGRLS---EMG 635
            Q   P G       G+    T P++ +   + + T EK +++    +E G LS   ++ 
Sbjct: 102 NQKFGPWGICCLELTGDNESYT-PRNINEADIILTTPEKFDAVSRYGIESGGLSFFSDIA 160

Query: 636 IIVIDELHMVGDQSRGYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVG 695
           +++IDE+H++ D  RG  LE ++++++  +                  K +P+  ++ + 
Sbjct: 161 LLLIDEVHLLND-PRGAALEAIVSRIKIISCNPKM-------------KLNPLAQVRFLA 206

Query: 696 MSATMPNVAAVADWLQVP 713
           +SAT+PN+  +A WL VP
Sbjct: 207 LSATIPNIEDLAKWLLVP 224