Miyakogusa Predicted Gene

Lj0g3v0077289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0077289.1 tr|B9HS45|B9HS45_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_767606 PE=4 SV=1,41.03,7e-16,
,CUFF.3916.1
         (122 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g111300.1 | hypothetical protein | HC | chr1:50274195-5027...   124   1e-29
Medtr4g131720.1 | hypothetical protein | HC | chr4:54952002-5495...    54   3e-08

>Medtr1g111300.1 | hypothetical protein | HC |
           chr1:50274195-50274709 | 20130731
          Length = 131

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 85/123 (69%), Gaps = 5/123 (4%)

Query: 1   METQYDDDTFYAEIRRQILLLTSE-DNEDSLERKRYKSTSVGDNGYGGSIRSVYSRTSPP 59
            ET+ +DDTFY EI+RQILLLTSE DNED +E   ++   V ++G   SI + Y+  + P
Sbjct: 11  FETENEDDTFYDEIKRQILLLTSEEDNEDLVETNSFRQIDVTNDGSNRSIYN-YNNATKP 69

Query: 60  ASNFCSWETNSSDSPPYWLVSLWKNGKGTGVFIPQAASSAPNNNRQGKMNSR-RKIYKPV 118
              F  WET+SS SPP WL +LW+NGKGTGVFIPQ   S   N R  +MN+R RKIY+PV
Sbjct: 70  TRKFYLWETDSSGSPPIWLTNLWRNGKGTGVFIPQV--SCKENQRPARMNNRTRKIYRPV 127

Query: 119 VNK 121
           VNK
Sbjct: 128 VNK 130


>Medtr4g131720.1 | hypothetical protein | HC |
           chr4:54952002-54953188 | 20130731
          Length = 117

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 21/114 (18%)

Query: 3   TQYDDDTFYAEIRRQILLLTSEDNEDSLERKRYKSTSVGDNGYGGSIRSVYSRTSPPASN 62
            + +DD ++A++ +QI LL  +++ED L    + S S+    + G+I        PP SN
Sbjct: 5   VELEDDLYFADLSKQISLLIMDEDEDPL--TSHPSHSL--QSFSGAIHP------PPQSN 54

Query: 63  FCSWETNSSDSPPYWLVSLWKNGKGTGVFIPQAASSAPNNNRQGKMNSRRKIYK 116
           F            Y  ++L +  KGTGVFIPQ+ +     +R+G+ +S  K  K
Sbjct: 55  FL-----------YEQMALRRQSKGTGVFIPQSTTQPRRKHRKGRSSSYAKCQK 97