Miyakogusa Predicted Gene

Lj0g3v0076559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0076559.1 tr|G7KFW5|G7KFW5_MEDTR Pre-mRNA-splicing factor
38B OS=Medicago truncatula GN=MTR_5g077180 PE=4
SV=1,97.96,0,PRP38,Pre-mRNA-splicing factor 38;
UNCHARACTERIZED,Pre-mRNA-splicing factor 38,CUFF.3871.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g077180.2 | pre-mRNA-splicing factor | HC | chr5:32943383-...   310   3e-85
Medtr5g077180.1 | pre-mRNA-splicing factor | HC | chr5:32943383-...   310   3e-85

>Medtr5g077180.2 | pre-mRNA-splicing factor | HC |
           chr5:32943383-32936664 | 20130731
          Length = 433

 Score =  310 bits (794), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 144/147 (97%), Positives = 145/147 (98%)

Query: 1   MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60
           MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYVADPKTLWSWFEPYIK 120
           GPST+FCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRY ADPKTLWSWFEPY K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYYADPKTLWSWFEPYAK 120

Query: 121 DDEEFSPGSNGRMTTMGVYIRDLLLGQ 147
           DDEEFSPGSNGRMTTMGVYIRDLLLGQ
Sbjct: 121 DDEEFSPGSNGRMTTMGVYIRDLLLGQ 147


>Medtr5g077180.1 | pre-mRNA-splicing factor | HC |
           chr5:32943383-32936664 | 20130731
          Length = 433

 Score =  310 bits (794), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 144/147 (97%), Positives = 145/147 (98%)

Query: 1   MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60
           MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYVADPKTLWSWFEPYIK 120
           GPST+FCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRY ADPKTLWSWFEPY K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYYADPKTLWSWFEPYAK 120

Query: 121 DDEEFSPGSNGRMTTMGVYIRDLLLGQ 147
           DDEEFSPGSNGRMTTMGVYIRDLLLGQ
Sbjct: 121 DDEEFSPGSNGRMTTMGVYIRDLLLGQ 147