Miyakogusa Predicted Gene

Lj0g3v0076199.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0076199.1 Non Characterized Hit- tr|D5ADJ7|D5ADJ7_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,38.1,1e-16,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
RING/U-box,NULL; no description,Zinc finger, RING/F,CUFF.3839.1
         (412 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g041750.1 | RING/U-box protein, putative | HC | chr5:18336...   531   e-151
Medtr3g117180.2 | RING/U-box protein | HC | chr3:54822019-548267...    80   5e-15
Medtr3g117180.1 | RING/U-box protein | HC | chr3:54822056-548266...    80   5e-15
Medtr8g037750.3 | ubiquitin-protein ligase | HC | chr8:13993741-...    78   2e-14
Medtr8g037750.2 | ubiquitin-protein ligase | HC | chr8:13993741-...    78   2e-14
Medtr8g037750.1 | ubiquitin-protein ligase | HC | chr8:13993741-...    78   2e-14
Medtr3g112230.3 | ubiquitin-protein ligase | HC | chr3:52557351-...    73   6e-13
Medtr3g112230.1 | ubiquitin-protein ligase | HC | chr3:52555883-...    72   7e-13
Medtr3g112230.4 | ubiquitin-protein ligase | HC | chr3:52556464-...    72   7e-13
Medtr3g112230.2 | ubiquitin-protein ligase | HC | chr3:52555883-...    72   7e-13
Medtr1g022505.5 | C3HC4-type RING zinc finger protein | HC | chr...    66   7e-11
Medtr1g022505.1 | C3HC4-type RING zinc finger protein | HC | chr...    66   8e-11
Medtr1g022505.4 | C3HC4-type RING zinc finger protein | HC | chr...    65   8e-11
Medtr1g022505.2 | C3HC4-type RING zinc finger protein | HC | chr...    65   8e-11
Medtr1g022505.3 | C3HC4-type RING zinc finger protein | HC | chr...    65   8e-11

>Medtr5g041750.1 | RING/U-box protein, putative | HC |
           chr5:18336039-18330022 | 20130731
          Length = 447

 Score =  531 bits (1368), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/415 (66%), Positives = 315/415 (75%), Gaps = 30/415 (7%)

Query: 1   MGPNEPYWRTNTSFSPPPTRWDFRFQSEGLPYSLSDGVQLYDGSPTSSNSKESRAWVRGN 60
           +GP+EPYWRTNTS+SPPP+RWDFRFQSEGLPYSLSDG QLYDGS TSSN KESR WVRGN
Sbjct: 58  LGPHEPYWRTNTSYSPPPSRWDFRFQSEGLPYSLSDGGQLYDGSSTSSNGKESRTWVRGN 117

Query: 61  QLYDLQYAASDGTGVFLSSP--SDLSQGPQWTPPAIQEISIDDYETLTRKGPHPS-GLAS 117
            LYDL Y+ +DGTG+F+SSP  SDLSQGPQW PPAIQEIS DDY  +TRK  HPS G  S
Sbjct: 118 HLYDLHYSVADGTGIFVSSPCPSDLSQGPQWMPPAIQEISFDDYTAVTRKDFHPSLGRIS 177

Query: 118 FTCTKEGTSKNPNRGGXXXXXXXXXXXXXTTKSNLSFQRNFSNHRSFISKPIHPLSFPDI 177
           FT TKEGTS+NP   G             TT S LSFQRNFSNHRSFISKPIHPLSFPD+
Sbjct: 178 FTPTKEGTSQNPYNRGSTSSESESSESESTTNSQLSFQRNFSNHRSFISKPIHPLSFPDL 237

Query: 178 TTTRDAFDPAVTTFTEFDTSTPLRDGQRWSSASSSQDFADVTESFELETPSHPHIPSDGS 237
           TT RDAFD AV+ +T FDTS  LRD QR S+ASSSQD AD+TESF+LETP+H H  SD  
Sbjct: 238 TTARDAFDHAVSDYTGFDTSNRLRDSQRSSNASSSQDSADITESFDLETPAHLHTQSDEF 297

Query: 238 RCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVC 297
           RC LCE+F+SQRSPWS+RRIVRSGDMP AG+LPCRHVFHAECL+Q TPKTRK +PPCPVC
Sbjct: 298 RCSLCEKFMSQRSPWSSRRIVRSGDMPAAGVLPCRHVFHAECLDQATPKTRKIEPPCPVC 357

Query: 298 VKFEEENSPDQRGTLRLRNGFPRLKPFCEDGPSRSWGCSQAGDCVAGALHAQPRNAMFLL 357
           VK EE+ SPDQRG +RLRN FP+ K                             ++MFLL
Sbjct: 358 VKLEEQYSPDQRGVVRLRNSFPKFK---------------------------SDDSMFLL 390

Query: 358 NRNRIKRNLSSKGNLSKEFPGKIRKSGAYSSQLFSGSSADQEAAGCSMATAGPSM 412
           NRNRI++NLS +GNLS +FPGK+RK+G Y SQLF+GSSA+ E    S A AGPS+
Sbjct: 391 NRNRIRKNLSMRGNLSNQFPGKVRKTGGYPSQLFTGSSANHEVGIYSKAKAGPSI 445


>Medtr3g117180.2 | RING/U-box protein | HC | chr3:54822019-54826776
           | 20130731
          Length = 451

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 63/135 (46%), Gaps = 8/135 (5%)

Query: 198 TPLRDGQRWSSASSSQDFADVTESFELETPSHPHIPSDGSRCRLCERFLSQRSPWSTRRI 257
           TP R  QRWS  S S  F    E     +      P D   C  C + L ++SPWST+ I
Sbjct: 234 TPQR--QRWSLDSES--FGSNRERLVRSSSWFSASPVDLRTCNFCSKVLKEKSPWSTQNI 289

Query: 258 VRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCVKFEEENSPDQRGTLR---- 313
             + D+    +L C HV+HAECLE  T    K DP CPVC   E++     +  L+    
Sbjct: 290 YSNNDLSVVAVLICGHVYHAECLENMTSDINKYDPACPVCSFGEKQTMKLAKKVLKAEMD 349

Query: 314 LRNGFPRLKPFCEDG 328
           L+    R K   EDG
Sbjct: 350 LKARNKRPKNQVEDG 364


>Medtr3g117180.1 | RING/U-box protein | HC | chr3:54822056-54826656
           | 20130731
          Length = 451

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 63/135 (46%), Gaps = 8/135 (5%)

Query: 198 TPLRDGQRWSSASSSQDFADVTESFELETPSHPHIPSDGSRCRLCERFLSQRSPWSTRRI 257
           TP R  QRWS  S S  F    E     +      P D   C  C + L ++SPWST+ I
Sbjct: 234 TPQR--QRWSLDSES--FGSNRERLVRSSSWFSASPVDLRTCNFCSKVLKEKSPWSTQNI 289

Query: 258 VRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCVKFEEENSPDQRGTLR---- 313
             + D+    +L C HV+HAECLE  T    K DP CPVC   E++     +  L+    
Sbjct: 290 YSNNDLSVVAVLICGHVYHAECLENMTSDINKYDPACPVCSFGEKQTMKLAKKVLKAEMD 349

Query: 314 LRNGFPRLKPFCEDG 328
           L+    R K   EDG
Sbjct: 350 LKARNKRPKNQVEDG 364


>Medtr8g037750.3 | ubiquitin-protein ligase | HC |
           chr8:13993741-13988036 | 20130731
          Length = 440

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%)

Query: 233 PSDGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDP 292
           P D   C +C   L+++S WST++I+ + D+    +L C HV+HAECLE  TP+  K DP
Sbjct: 266 PVDLQTCGVCSNHLTEKSSWSTQKIIANNDLSVVSVLICGHVYHAECLESITPEINKYDP 325

Query: 293 PCPVCVKFEEE 303
            CPVC   E++
Sbjct: 326 ACPVCTFGEKQ 336


>Medtr8g037750.2 | ubiquitin-protein ligase | HC |
           chr8:13993741-13988036 | 20130731
          Length = 440

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%)

Query: 233 PSDGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDP 292
           P D   C +C   L+++S WST++I+ + D+    +L C HV+HAECLE  TP+  K DP
Sbjct: 266 PVDLQTCGVCSNHLTEKSSWSTQKIIANNDLSVVSVLICGHVYHAECLESITPEINKYDP 325

Query: 293 PCPVCVKFEEE 303
            CPVC   E++
Sbjct: 326 ACPVCTFGEKQ 336


>Medtr8g037750.1 | ubiquitin-protein ligase | HC |
           chr8:13993741-13988036 | 20130731
          Length = 440

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%)

Query: 233 PSDGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDP 292
           P D   C +C   L+++S WST++I+ + D+    +L C HV+HAECLE  TP+  K DP
Sbjct: 266 PVDLQTCGVCSNHLTEKSSWSTQKIIANNDLSVVSVLICGHVYHAECLESITPEINKYDP 325

Query: 293 PCPVCVKFEEE 303
            CPVC   E++
Sbjct: 326 ACPVCTFGEKQ 336


>Medtr3g112230.3 | ubiquitin-protein ligase | HC |
           chr3:52557351-52559879 | 20130731
          Length = 438

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 187 AVTTFTEFDTSTPLRDGQRWSSASSSQDFADVTESFELETPSHPHIPS-DGSRCRLCERF 245
           ++ TF+E   S+     +RWS    S+ F          +    + P+ D   C  C + 
Sbjct: 230 SMRTFSELVASS---QKERWSF--DSEHFGSGRHKLSATSSRFSYSPTMDLQSCGACSKL 284

Query: 246 LSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCVKFEEENS 305
           L++R+ WS+++ + + D+    +L C H +HAECLE  T +    DP CP+C+  E+  S
Sbjct: 285 LTERTAWSSQKFISNNDLSVVAVLVCGHAYHAECLETMTSEADSYDPACPICMVGEKHLS 344

Query: 306 PDQRGTLR 313
              R +LR
Sbjct: 345 MLSRKSLR 352


>Medtr3g112230.1 | ubiquitin-protein ligase | HC |
           chr3:52555883-52559879 | 20130731
          Length = 433

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 187 AVTTFTEFDTSTPLRDGQRWSSASSSQDFADVTESFELETPSHPHIPS-DGSRCRLCERF 245
           ++ TF+E   S+     +RWS    S+ F          +    + P+ D   C  C + 
Sbjct: 225 SMRTFSELVASS---QKERWSF--DSEHFGSGRHKLSATSSRFSYSPTMDLQSCGACSKL 279

Query: 246 LSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCVKFEEENS 305
           L++R+ WS+++ + + D+    +L C H +HAECLE  T +    DP CP+C+  E+  S
Sbjct: 280 LTERTAWSSQKFISNNDLSVVAVLVCGHAYHAECLETMTSEADSYDPACPICMVGEKHLS 339

Query: 306 PDQRGTLR 313
              R +LR
Sbjct: 340 MLSRKSLR 347


>Medtr3g112230.4 | ubiquitin-protein ligase | HC |
           chr3:52556464-52559879 | 20130731
          Length = 433

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 187 AVTTFTEFDTSTPLRDGQRWSSASSSQDFADVTESFELETPSHPHIPS-DGSRCRLCERF 245
           ++ TF+E   S+     +RWS    S+ F          +    + P+ D   C  C + 
Sbjct: 225 SMRTFSELVASS---QKERWSF--DSEHFGSGRHKLSATSSRFSYSPTMDLQSCGACSKL 279

Query: 246 LSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCVKFEEENS 305
           L++R+ WS+++ + + D+    +L C H +HAECLE  T +    DP CP+C+  E+  S
Sbjct: 280 LTERTAWSSQKFISNNDLSVVAVLVCGHAYHAECLETMTSEADSYDPACPICMVGEKHLS 339

Query: 306 PDQRGTLR 313
              R +LR
Sbjct: 340 MLSRKSLR 347


>Medtr3g112230.2 | ubiquitin-protein ligase | HC |
           chr3:52555883-52559879 | 20130731
          Length = 433

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 187 AVTTFTEFDTSTPLRDGQRWSSASSSQDFADVTESFELETPSHPHIPS-DGSRCRLCERF 245
           ++ TF+E   S+     +RWS    S+ F          +    + P+ D   C  C + 
Sbjct: 225 SMRTFSELVASS---QKERWSF--DSEHFGSGRHKLSATSSRFSYSPTMDLQSCGACSKL 279

Query: 246 LSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCVKFEEENS 305
           L++R+ WS+++ + + D+    +L C H +HAECLE  T +    DP CP+C+  E+  S
Sbjct: 280 LTERTAWSSQKFISNNDLSVVAVLVCGHAYHAECLETMTSEADSYDPACPICMVGEKHLS 339

Query: 306 PDQRGTLR 313
              R +LR
Sbjct: 340 MLSRKSLR 347


>Medtr1g022505.5 | C3HC4-type RING zinc finger protein | HC |
           chr1:7246080-7247867 | 20130731
          Length = 349

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 235 DGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPC 294
           D   C +C R L  +S    ++ + + D+ +  IL C+HVFHAECLE  T    K DPPC
Sbjct: 185 DLQSCGICMRPLCDKSAGINQKFIANIDLSSVAILACKHVFHAECLEPMTDDADKYDPPC 244

Query: 295 PVCVKFEEENS 305
           P+C+  ++ +S
Sbjct: 245 PICMVDDKHSS 255


>Medtr1g022505.1 | C3HC4-type RING zinc finger protein | HC |
           chr1:7243871-7247480 | 20130731
          Length = 391

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 235 DGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPC 294
           D   C +C R L  +S    ++ + + D+ +  IL C+HVFHAECLE  T    K DPPC
Sbjct: 227 DLQSCGICMRPLCDKSAGINQKFIANIDLSSVAILACKHVFHAECLEPMTDDADKYDPPC 286

Query: 295 PVCVKFEEENS 305
           P+C+  ++ +S
Sbjct: 287 PICMVDDKHSS 297


>Medtr1g022505.4 | C3HC4-type RING zinc finger protein | HC |
           chr1:7243845-7247867 | 20130731
          Length = 378

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 235 DGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPC 294
           D   C +C R L  +S    ++ + + D+ +  IL C+HVFHAECLE  T    K DPPC
Sbjct: 214 DLQSCGICMRPLCDKSAGINQKFIANIDLSSVAILACKHVFHAECLEPMTDDADKYDPPC 273

Query: 295 PVCVKFEEENS 305
           P+C+  ++ +S
Sbjct: 274 PICMVDDKHSS 284


>Medtr1g022505.2 | C3HC4-type RING zinc finger protein | HC |
           chr1:7243845-7247867 | 20130731
          Length = 378

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 235 DGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPC 294
           D   C +C R L  +S    ++ + + D+ +  IL C+HVFHAECLE  T    K DPPC
Sbjct: 214 DLQSCGICMRPLCDKSAGINQKFIANIDLSSVAILACKHVFHAECLEPMTDDADKYDPPC 273

Query: 295 PVCVKFEEENS 305
           P+C+  ++ +S
Sbjct: 274 PICMVDDKHSS 284


>Medtr1g022505.3 | C3HC4-type RING zinc finger protein | HC |
           chr1:7243845-7247867 | 20130731
          Length = 378

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 235 DGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPC 294
           D   C +C R L  +S    ++ + + D+ +  IL C+HVFHAECLE  T    K DPPC
Sbjct: 214 DLQSCGICMRPLCDKSAGINQKFIANIDLSSVAILACKHVFHAECLEPMTDDADKYDPPC 273

Query: 295 PVCVKFEEENS 305
           P+C+  ++ +S
Sbjct: 274 PICMVDDKHSS 284