Miyakogusa Predicted Gene

Lj0g3v0075799.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0075799.3 Non Characterized Hit- tr|H2Y878|H2Y878_CIOSA
Uncharacterized protein (Fragment) OS=Ciona savignyi
P,42.86,4.3,seg,NULL,CUFF.3815.3
         (147 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g071820.1 | periplasmic polyamine-binding protein, putativ...    92   1e-19

>Medtr8g071820.1 | periplasmic polyamine-binding protein, putative |
           HC | chr8:30301113-30296760 | 20130731
          Length = 552

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 1   MAIPLQTXXXXXXXXXXXXXXFQNHNPNPNPLHSFLI--IPTKSPLRFSGHRNFTHRSPA 58
           MA+ LQT              F   NPN N +++FLI   P KS L+FS HRN THRSPA
Sbjct: 1   MAVLLQTHYTLSLPSPRYPYLFSIRNPNSN-VYNFLIPTTPLKSQLQFSNHRNPTHRSPA 59

Query: 59  SLTAAARREPSETTPLKLPQALVRLAVSAALFLCLGRFSRSSKL 102
           S  +A+RREPSETT LKLP+ALVR+ VS ALFLC G  + S+ L
Sbjct: 60  SPVSASRREPSETTSLKLPRALVRVTVSIALFLCCGIRACSASL 103